commit: 95d5b599719ff1ac04a71578573eeb7137cc0668 Author: Horea Christian <horea.christ <AT> yandex <DOT> com> AuthorDate: Fri Dec 7 01:03:19 2018 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Fri Dec 7 01:05:01 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=95d5b599
sci-biology/nilearn: version bump Sadly without unbundling joblib, and it will stay this way until sci-libs/scikits_learn reverts to system joblib. Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: Horea Christian <horea.christ <AT> yandex.com> sci-biology/nilearn/nilearn-0.5.0.ebuild | 57 ++++++++++++++++++++++++++++++++ 1 file changed, 57 insertions(+) diff --git a/sci-biology/nilearn/nilearn-0.5.0.ebuild b/sci-biology/nilearn/nilearn-0.5.0.ebuild new file mode 100644 index 000000000..3380e73c6 --- /dev/null +++ b/sci-biology/nilearn/nilearn-0.5.0.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2018 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) + +inherit distutils-r1 + +DESCRIPTION="Fast and easy statistical learning on NeuroImaging data" +HOMEPAGE="http://nilearn.github.io/" +SRC_URI="https://github.com/nilearn/nilearn/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="+plot test" + +DEPEND=" + test? ( + ${RDEPEND} + dev-python/nose[${PYTHON_USEDEP}] + ) + dev-python/setuptools[${PYTHON_USEDEP}] + " +RDEPEND=" + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + sci-libs/scikits_learn[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + plot? ( dev-python/matplotlib[${PYTHON_USEDEP}] )" + +# (Temporarily) commented out, since Gentoo sci-libs/scikits_learn decided it +# is a mess to maintain system joblib usage +#PATCHES=( "${FILESDIR}/0.4.1-bundled_joblib_test.patch" ) + +python_prepare_all() { + # upstream is reluctant to *not* depend on bundled scikits_learn: + # https://github.com/nilearn/nilearn/pull/1398 + # (Temporarily) commented out, since Gentoo sci-libs/scikits_learn decided it + # is a mess to maintain system joblib usage + #local f + #for f in nilearn/{*/*/,*/,}*.py; do + # sed -r \ + # -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ + # -e 's/from (sklearn|\.|)\.externals import/import/' \ + # -i $f || die + #done + + distutils-r1_python_prepare_all +} + +python_test() { + echo "backend: Agg" > matplotlibrc + MPLCONFIGDIR=. nosetests -v || die +}