commit: a89157a16ae4e45837bcd4ac865c242d2ca32423
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Thu Nov 7 01:51:27 2019 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Nov 7 01:51:27 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a89157a1
dev-python/fslpy: package from newly modular FSL stack
Package-Manager: Portage-2.3.77, Repoman-2.3.17
Signed-off-by: Horea Christian <horea.christ <AT> yandex.com>
.../fslpy/files/fslpy-2.6.2-exclude_tests.patch | 10 +++++
dev-python/fslpy/fslpy-2.6.2.ebuild | 43 ++++++++++++++++++++++
dev-python/fslpy/metadata.xml | 18 +++++++++
3 files changed, 71 insertions(+)
diff --git a/dev-python/fslpy/files/fslpy-2.6.2-exclude_tests.patch
b/dev-python/fslpy/files/fslpy-2.6.2-exclude_tests.patch
new file mode 100644
index 000000000..503cd5332
--- /dev/null
+++ b/dev-python/fslpy/files/fslpy-2.6.2-exclude_tests.patch
@@ -0,0 +1,10 @@
+--- a/setup.py 2019-11-04 18:56:47.407791008 +0100
++++ b/setup.py 2019-11-04 20:00:24.844224851 +0100
+@@ -29,6 +29,6 @@
+
+ packages = find_packages(
+- exclude=('doc', 'tests', 'dist', 'build', 'fslpy.egg-info'))
++ exclude=('doc', 'tests', 'tests.*', 'dist', 'build', 'fslpy.egg-info'))
+
+ # Figure out the current fslpy version, as defined in fsl/version.py. We
+ # don't want to import the fsl package, as this may cause build problems.
diff --git a/dev-python/fslpy/fslpy-2.6.2.ebuild
b/dev-python/fslpy/fslpy-2.6.2.ebuild
new file mode 100644
index 000000000..31ea40ece
--- /dev/null
+++ b/dev-python/fslpy/fslpy-2.6.2.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{5,6} )
+
+inherit distutils-r1 virtualx
+
+DESCRIPTION="The FSL Python Library"
+HOMEPAGE="https://git.fmrib.ox.ac.uk/fsl/fslpy";
+SRC_URI="https://github.com/pauldmccarthy/${PN}/archive/${PV}.tar.gz ->
${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+ test? (
+ dev-python/pytest[${PYTHON_USEDEP}]
+ dev-python/pytest-cov[${PYTHON_USEDEP}]
+ )
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ "
+RDEPEND="
+ dev-python/deprecation[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/indexed_gzip[${PYTHON_USEDEP}]
+ =dev-python/numpy-1*[${PYTHON_USEDEP}]
+ =dev-python/six-1*[${PYTHON_USEDEP}]
+ dev-python/trimesh[${PYTHON_USEDEP}]
+ =dev-python/wxpython-4*[${PYTHON_USEDEP}]
+ =sci-libs/Rtree-0.8.3*[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ >=sci-libs/nibabel-2.3.1[${PYTHON_USEDEP}]
+ "
+
+PATCHES=( "${FILESDIR}/${P}-exclude_tests.patch" )
+
+python_test() {
+ virtx pytest -m "not (dicomtest or fsltest)" --verbose || die
+}
diff --git a/dev-python/fslpy/metadata.xml b/dev-python/fslpy/metadata.xml
new file mode 100644
index 000000000..1e458f838
--- /dev/null
+++ b/dev-python/fslpy/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
+<pkgmetadata>
+ <maintainer type="person">
+ <email>horea.chr...@gmail.com</email>
+ <name>Horea Christian</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>s...@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <longdescription lang="en">
+ FSLeyes is a viewer for 3D and 4D neuroimaging data. It is
intended as a
+ replacement for the much loved FSLView. FSLeyes offers similar
functionality
+ to FSLView, and aims to improve and expand upon this
functionality in many
+ ways.
+ </longdescription>
+</pkgmetadata>
