commit: d923ee66e7cca27851fa0b1a7af9031c3233bc70
Author: Patrick McLean <patrick.mclean <AT> sony <DOT> com>
AuthorDate: Wed Nov 20 01:24:00 2019 +0000
Commit: Patrick McLean <chutzpah <AT> gentoo <DOT> org>
CommitDate: Wed Nov 20 01:24:00 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d923ee66
dev-python/numpy: Version bump to 1.17.4, add python3.8
This also drops python2.7 since upstream no longer supports it.
Copyright: Sony Interactive Entertainment Inc.
Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Patrick McLean <chutzpah <AT> gentoo.org>
dev-python/numpy/Manifest | 1 +
.../files/numpy-1.17.4-no-hardcode-blas.patch | 55 ++++++++
dev-python/numpy/numpy-1.17.4.ebuild | 157 +++++++++++++++++++++
3 files changed, 213 insertions(+)
diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest
index d1b4c64c85e..972c6ff7b69 100644
--- a/dev-python/numpy/Manifest
+++ b/dev-python/numpy/Manifest
@@ -2,6 +2,7 @@ DIST numpy-1.14.5.zip 4904624 BLAKE2B
14d266bf1139b9539e39d08a6537e2b772e80bf46a
DIST numpy-1.15.4.zip 4473522 BLAKE2B
c030ef4a06c84091eec11b6602422468bd0674489a2c7fea1230132cd3a3ca1b10ec87eeb6788f2f263943f9ac43026dc1e7f0f5f1d52e9d1cc6934a5d361090
SHA512
9e0516da04368f0353fb7e3cc2c72e1ec936042908309732a298405bd7111e712899627b82f3674295b611e0ebfd74ef91d693f065fe9cb03dc7de23d1e72676
DIST numpy-1.16.1.zip 5070040 BLAKE2B
0429d27d88ec97e207822c9c7fa759453bbef97d1d5fdf3e68dab21ca098a6321e2e57d85561dd99084d190b8ed6fce20f00b421c8d14a249fc45dc1ea09569e
SHA512
e4adce4f40a3cb6ac482f82db9fcd079179b03b0e878920cfc7d98b9f622adab997c68af892b209f417d5f31b4123a1c5ff5c07cf5b0aaa496d8be6c8354bde8
DIST numpy-1.16.5.zip 5138208 BLAKE2B
f5511650e66939a6ce21cfad7874aecdeb6c07a70b32419a808956e42c7819d82bb364f1632da91b4d8a5237001c8ae3cbdcac10651fa0acca9558bdeafb5437
SHA512
6dd790ff57fdb7e7b0bddb47ea2b70b2667edefe632548ec68934e12a16af4a51bed9726e495c4993aad4c448dc4a204d0a087577d43dcfc9fa0164eb1d4b898
+DIST numpy-1.17.4.zip 6366657 BLAKE2B
89f729bb0740fa721dfe8d1165094a96302fde1e8c272689c11cb4a9bb39d11afaf6eda3ded8a370333b47b9d1ee25e8cb0a602c8cf44964612342c50ea5824f
SHA512
f3264be7152437d71718da4728222962013ebd7fe02288d5063f1c763d1c4eee26485c27e8088f4dff79a4d491bc9f191849748c6007d093d22e89c6bff317f3
DIST numpy-1.8.2.tar.gz 3792998 BLAKE2B
00d22c72ab6f919626d3fba0edc477fb9c19f9c299f78cff6102e1860e3d1baec8f3b17aa23be797e9a34630428174de3f3b630c3f05c5340024dc6314fad8cd
SHA512
996e6b8e2d42f223e44660f56bf73eb8ab124f400d89218f8f5e4d7c9860ada44a4d7c54526137b0695c7a10f36e8834fbf0d42b7cb20bcdb5d5c245d673385c
DIST numpy-html-1.14.5.zip 11197881 BLAKE2B
00cac3c5be07f644328acd9ed155a6fc07ed7d7380584732bb3ac03562c8705cd152612f461d5dc251dabe0be4ba45593165a961496e351110e1aa7598c37370
SHA512
578d31660de4e1f57310b3a2137cefea17228f40046eef1689fb6d9302f0fe0fda5aaf473c3b8c69ae781049950022321593ec891a5640e3c36c886ab3bf4383
DIST numpy-html-1.15.4.zip 11158615 BLAKE2B
eb264cd51fd61b389e858300d96be63f8e2eeaa0b7346beac571b62d96867d6820c19d5043a6f81088dc52b1e4d7f3f295e02ff5ff90351b0feccf657ce90001
SHA512
1cad60013f374f456bbb1fb6161545a94e252205c28054f9b33cde65330772ab243339289517a8825957a21e210455d33bcc0b9c588052c49c88257b1b04facb
diff --git a/dev-python/numpy/files/numpy-1.17.4-no-hardcode-blas.patch
b/dev-python/numpy/files/numpy-1.17.4-no-hardcode-blas.patch
new file mode 100644
index 00000000000..8c2a58a1940
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.17.4-no-hardcode-blas.patch
@@ -0,0 +1,55 @@
+diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py
+index ba2b1f46c..09db18e69 100644
+--- a/numpy/distutils/system_info.py
++++ b/numpy/distutils/system_info.py
+@@ -374,28 +374,7 @@ def get_info(name, notfound_action=0):
+ 1 - display warning message
+ 2 - raise error
+ """
+- cl = {'atlas': atlas_info, # use lapack_opt or blas_opt instead
+- 'atlas_threads': atlas_threads_info, # ditto
+- 'atlas_blas': atlas_blas_info,
+- 'atlas_blas_threads': atlas_blas_threads_info,
+- 'lapack_atlas': lapack_atlas_info, # use lapack_opt instead
+- 'lapack_atlas_threads': lapack_atlas_threads_info, # ditto
+- 'atlas_3_10': atlas_3_10_info, # use lapack_opt or blas_opt instead
+- 'atlas_3_10_threads': atlas_3_10_threads_info, #
ditto
+- 'atlas_3_10_blas': atlas_3_10_blas_info,
+- 'atlas_3_10_blas_threads': atlas_3_10_blas_threads_info,
+- 'lapack_atlas_3_10': lapack_atlas_3_10_info, # use lapack_opt
instead
+- 'lapack_atlas_3_10_threads': lapack_atlas_3_10_threads_info, #
ditto
+- 'flame': flame_info, # use lapack_opt instead
+- 'mkl': mkl_info,
+- # openblas which may or may not have embedded lapack
+- 'openblas': openblas_info, # use blas_opt instead
+- # openblas with embedded lapack
+- 'openblas_lapack': openblas_lapack_info, # use blas_opt instead
+- 'openblas_clapack': openblas_clapack_info, # use blas_opt instead
+- 'blis': blis_info, # use blas_opt instead
+- 'lapack_mkl': lapack_mkl_info, # use lapack_opt instead
+- 'blas_mkl': blas_mkl_info, # use blas_opt instead
++ cl = {'flame': flame_info, # use lapack_opt instead
+ 'accelerate': accelerate_info, # use blas_opt instead
+ 'x11': x11_info,
+ 'fft_opt': fft_opt_info,
+@@ -796,10 +775,7 @@ class system_info(object):
+ return [b for b in [a.strip() for a in libs.split(',')] if b]
+
+ def get_libraries(self, key='libraries'):
+- if hasattr(self, '_lib_names'):
+- return self.get_libs(key, default=self._lib_names)
+- else:
+- return self.get_libs(key, '')
++ return self.get_libs(key, '')
+
+ def library_extensions(self):
+ c = customized_ccompiler()
+@@ -1842,7 +1818,7 @@ class blas_info(system_info):
+ lib = self.get_cblas_libs(info)
+ if lib is not None:
+ info['language'] = 'c'
+- info['libraries'] = lib
++ info['libraries'] = [lib]
+ info['define_macros'] = [('HAVE_CBLAS', None)]
+ self.set_info(**info)
+
diff --git a/dev-python/numpy/numpy-1.17.4.ebuild
b/dev-python/numpy/numpy-1.17.4.ebuild
new file mode 100644
index 00000000000..607f5f55d31
--- /dev/null
+++ b/dev-python/numpy/numpy-1.17.4.ebuild
@@ -0,0 +1,157 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{5,6,7,8} )
+PYTHON_REQ_USE="threads(+)"
+
+FORTRAN_NEEDED=lapack
+
+inherit distutils-r1 flag-o-matic fortran-2 multiprocessing toolchain-funcs
+
+DOC_PV="1.16.4"
+DESCRIPTION="Fast array and numerical python library"
+HOMEPAGE="https://www.numpy.org";
+SRC_URI="
+ mirror://pypi/${PN:0:1}/${PN}/${P}.zip
+ doc? (
+ https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-html.zip
-> numpy-html-${DOC_PV}.zip
+ https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-ref.pdf ->
numpy-ref-${DOC_PV}.pdf
+ https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-user.pdf
-> numpy-user-${DOC_PV}.pdf
+ )"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh
~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos
~sparc-solaris ~x64-solaris ~x86-solaris"
+IUSE="doc lapack test"
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+ lapack? (
+ virtual/cblas
+ virtual/lapack
+ )"
+DEPEND="${RDEPEND}"
+BDEPEND="app-arch/unzip
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ lapack? ( virtual/pkgconfig )
+ test? (
+ dev-python/pytest[${PYTHON_USEDEP}]
+ )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-1.17.4-no-hardcode-blas.patch
+)
+
+src_unpack() {
+ default
+ if use doc; then
+ unzip -qo "${DISTDIR}"/numpy-html-${DOC_PV}.zip -d html || die
+ fi
+}
+
+pc_incdir() {
+ $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+ sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+ $(tc-getPKG_CONFIG) --libs-only-L $@ | \
+ sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+ $(tc-getPKG_CONFIG) --libs-only-l $@ | \
+ sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+ -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+ | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+ if use lapack; then
+ append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas
lapack)"
+ local incdir="${EPREFIX}"/usr/include
+ local libdir="${EPREFIX}"/usr/$(get_libdir)
+ cat >> site.cfg <<-EOF || die
+ [blas]
+ include_dirs = $(pc_incdir cblas):${incdir}
+ library_dirs = $(pc_libdir cblas blas):${libdir}
+ blas_libs = $(pc_libs cblas blas)
+ [lapack]
+ library_dirs = $(pc_libdir lapack):${libdir}
+ lapack_libs = $(pc_libs lapack)
+ EOF
+ else
+ export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None
+ fi
+
+ export CC="$(tc-getCC) ${CFLAGS}"
+
+ append-flags -fno-strict-aliasing
+
+ # See progress in http://projects.scipy.org/scipy/numpy/ticket/573
+ # with the subtle difference that we don't want to break Darwin where
+ # -shared is not a valid linker argument
+ if [[ ${CHOST} != *-darwin* ]]; then
+ append-ldflags -shared
+ fi
+
+ # only one fortran to link with:
+ # linking with cblas and lapack library will force
+ # autodetecting and linking to all available fortran compilers
+ append-fflags -fPIC
+ if use lapack; then
+ NUMPY_FCONFIG="config_fc --noopt --noarch"
+ # workaround bug 335908
+ [[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+="
--fcompiler=gnu95"
+ fi
+
+ # don't version f2py, we will handle it.
+ sed -i -e '/f2py_exe/s: + os\.path.*$::' numpy/f2py/setup.py || die
+
+ # disable fuzzed tests
+ find numpy/*/tests -name '*.py' -exec sed -i \
+ -e 's:def \(.*_fuzz\):def _\1:' {} + || die
+ # very memory- and disk-hungry
+ sed -i -e 's:test_large_zip:_&:' numpy/lib/tests/test_io.py || die
+
+ distutils-r1_python_prepare_all
+}
+
+python_compile() {
+ export MAKEOPTS=-j1 #660754
+
+ local python_makeopts_jobs=""
+ python_is_python3 || python_makeopts_jobs="-j $(makeopts_jobs)"
+ distutils-r1_python_compile \
+ ${python_makeopts_jobs} \
+ ${NUMPY_FCONFIG}
+}
+
+python_test() {
+ distutils_install_for_testing --single-version-externally-managed \
+ --record "${TMPDIR}/record.txt" ${NUMPY_FCONFIG}
+
+ cd "${TMPDIR}" || die
+
+ "${EPYTHON}" -c "
+import numpy, sys
+r = numpy.test(label='full', verbose=3)
+sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install() {
+ distutils-r1_python_install ${NUMPY_FCONFIG}
+ python_optimize
+}
+
+python_install_all() {
+ local DOCS=( THANKS.txt )
+
+ if use doc; then
+ local HTML_DOCS=( "${WORKDIR}"/html/. )
+ DOCS+=( "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf )
+ fi
+
+ distutils-r1_python_install_all
+}
