commit: 59207df0adf0358f1b0daf22e483bb860ff79f4f
Author: Aaron Bauman <bman <AT> gentoo <DOT> org>
AuthorDate: Thu Jul 23 18:36:25 2020 +0000
Commit: Aaron Bauman <bman <AT> gentoo <DOT> org>
CommitDate: Thu Jul 23 18:36:25 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=59207df0
*/*: drop last-rited pkgs
Signed-off-by: Aaron Bauman <bman <AT> gentoo.org>
dev-python/Numdifftools/Manifest | 1 -
.../Numdifftools/Numdifftools-0.9.17-r1.ebuild | 60 ----------------
dev-python/Numdifftools/metadata.xml | 12 ----
dev-python/pyscaffold/Manifest | 1 -
dev-python/pyscaffold/metadata.xml | 8 ---
dev-python/pyscaffold/pyscaffold-2.4.4.ebuild | 57 ---------------
profiles/package.mask | 20 ------
sci-chemistry/relax/Manifest | 1 -
sci-chemistry/relax/metadata.xml | 30 --------
sci-chemistry/relax/relax-4.0.0-r4.ebuild | 83 ----------------------
10 files changed, 273 deletions(-)
diff --git a/dev-python/Numdifftools/Manifest b/dev-python/Numdifftools/Manifest
deleted file mode 100644
index 8e61b06d1eb..00000000000
--- a/dev-python/Numdifftools/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST numdifftools-0.9.17.zip 363422 BLAKE2B
fa57ef2b9cb6dcaa669f14720f3fd1ed105f48b16549acd7bb6d7633b17cd45355022c9949a6099c3cbddc6b1a74b0f669344c4dd5e6f5ad56cc640549f4650c
SHA512
acef3865861c76f0850b6f1c5ca5633f695603a7458c79569bbe887404c8490845d935693c57ea18468fe3cb7f864fe5481285f731dc933b6c0b521e3b888328
diff --git a/dev-python/Numdifftools/Numdifftools-0.9.17-r1.ebuild
b/dev-python/Numdifftools/Numdifftools-0.9.17-r1.ebuild
deleted file mode 100644
index 610789b9e01..00000000000
--- a/dev-python/Numdifftools/Numdifftools-0.9.17-r1.ebuild
+++ /dev/null
@@ -1,60 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-MY_PN=numdifftools
-MY_P="${MY_PN}-${PV}"
-
-DESCRIPTION="Solves automatic numerical differentiation problems in one or
more variables"
-HOMEPAGE="https://pypi.org/project/Numdifftools/
https://github.com/pbrod/numdifftools";
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${MY_P}.zip"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- >=dev-python/algopy-0.4[${PYTHON_USEDEP}]
- || (
- dev-python/matplotlib-python2[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- )
- || (
- >=dev-python/numpy-python2-1.9.0[${PYTHON_USEDEP}]
- >=dev-python/numpy-1.9.0[${PYTHON_USEDEP}]
- )
- dev-python/six[${PYTHON_USEDEP}]
- >=sci-libs/scipy-0.8[${PYTHON_USEDEP}]
- "
-DEPEND="
- app-arch/unzip
- >=dev-python/setuptools-0.9[${PYTHON_USEDEP}]
- dev-python/setuptools_scm[${PYTHON_USEDEP}]
- dev-python/pyscaffold[${PYTHON_USEDEP}]
- test? (
- ${RDEPEND}
- dev-python/pytest[${PYTHON_USEDEP}]
- dev-python/pytest-runner[${PYTHON_USEDEP}]
- )"
-
-S="${WORKDIR}"/${MY_P}
-
-python_prepare_all() {
- # pulls coverage test
- sed \
- -e '/tests_require/d' \
- -i setup.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_test() {
- esetup.py test
-}
diff --git a/dev-python/Numdifftools/metadata.xml
b/dev-python/Numdifftools/metadata.xml
deleted file mode 100644
index 0f633d69c9f..00000000000
--- a/dev-python/Numdifftools/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
-<pkgmetadata>
- <maintainer type="project">
- <email>s...@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <upstream>
- <remote-id type="pypi">Numdifftools</remote-id>
- <remote-id type="github">pbrod/numdifftools</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/dev-python/pyscaffold/Manifest b/dev-python/pyscaffold/Manifest
deleted file mode 100644
index ef90d3daae0..00000000000
--- a/dev-python/pyscaffold/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST pyscaffold-2.4.4.tar.gz 110337 BLAKE2B
c436cc4967cb671cca36b5b28a69ef27f486264bc39d1bbc40d745ea015f57db053fbf38d66a92b53c5f6c82a60d75ed2b114b27b9906db02c5bb6cc14de24c2
SHA512
840d205a84528410674e898d6f32a57d3e89edf71e4773a4aae38a4f1fdd883129f6f7be437c2d07fe89b58152a3b250f4a9a7125d1a6d9461673a7f22094d70
diff --git a/dev-python/pyscaffold/metadata.xml
b/dev-python/pyscaffold/metadata.xml
deleted file mode 100644
index ac33afdd6be..00000000000
--- a/dev-python/pyscaffold/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
-<pkgmetadata>
- <!--maintainer-needed-->
- <upstream>
- <remote-id type="pypi">PyScaffold</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/dev-python/pyscaffold/pyscaffold-2.4.4.ebuild
b/dev-python/pyscaffold/pyscaffold-2.4.4.ebuild
deleted file mode 100644
index e5fcd987a5a..00000000000
--- a/dev-python/pyscaffold/pyscaffold-2.4.4.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 python3_6 )
-
-inherit distutils-r1
-
-MY_PN="PyScaffold"
-MY_P="${MY_PN}-${PV}"
-
-DESCRIPTION="Tool for easily putting up the scaffold of a Python project"
-HOMEPAGE="https://pypi.org/project/PyScaffold/
https://pyscaffold.readthedocs.io/en/latest/";
-SRC_URI="mirror://pypi/${MY_PN:0:1}/${MY_PN}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- dev-python/six[${PYTHON_USEDEP}]
-"
-DEPEND="${RDEPEND}
- >=dev-python/pbr-1.6[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- >=dev-python/setuptools_scm-1.7[${PYTHON_USEDEP}]
- test? (
- dev-python/pytest[${PYTHON_USEDEP}]
- )
-"
-
-python_prepare_all() {
- sed \
- -e 's: + pytest_runner::g' \
- -i setup.py || die
-
- # Creates all sort of mem problem due to fetch restrictions
- rm tests/test_install.py || die
-
- # Online tests
- sed \
- -e 's:test_api_with_cookiecutter:_&:g' \
- -e 's:test_pyscaffold_keyword:_&:g' \
- -i tests/*py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_test() {
- git config --global user.email "y...@example.com"
- git config --global user.name "Your Name"
-
- TRAVIS=False pytest -vv || die
-}
diff --git a/profiles/package.mask b/profiles/package.mask
index 4b278c13946..5b10e369b30 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -486,26 +486,6 @@ dev-tex/dot2texi
# Removal in 30 days. Bug #729376.
dev-python/pytest-runner
-# Michał Górny <mgo...@gentoo.org> (2020-06-23)
-# Python 2 only.
-#
-# Relax involves implementation conflicts between dependencies. Even
-# if you can get past them, it requires Numdifftools, and...
-#
-# Numdifftools fails with modern versions of setuptools, most likely
-# because it uses pyscaffold that is broken. There are newer versions
-# that removed pyscaffold support but they have new dependencies that
-# do not support py2 and porting them back is just not worth the effort.
-# Its only revdep is relax.
-#
-# Pyscaffold is just broken and required only by old versions
-# of Numdifftools.
-#
-# Removal in 30 days. Bug #704032.
-dev-python/Numdifftools
-dev-python/pyscaffold
-sci-chemistry/relax
-
# Sergei Trofimovich <sly...@gentoo.org> (2020-06-21)
# virtual/libstdc++ has only one sys-libs/libstdc++-v3 provider.
# Use that instead. Or even better use none of them. It's a
diff --git a/sci-chemistry/relax/Manifest b/sci-chemistry/relax/Manifest
deleted file mode 100644
index 449761ba3ef..00000000000
--- a/sci-chemistry/relax/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST relax-4.0.0.src.tar.bz2 105659752 BLAKE2B
ce5fc9b7f31787f2189e75a543f8ba6fe3cd59ce7382c6c0f79c419b9f71b2d09bd16685e7fed3c9e3205be531efa2a8dc1cce707e77e2386d2a9f7a71b4b0c1
SHA512
28b5ddab2c83f95d7e1a502d05b5d3c93337fece68a1fef95ec8978f61fccf24cb37528cfef27cb20d132033535f4120b23cc76a75f34f52b27df17116351f8e
diff --git a/sci-chemistry/relax/metadata.xml b/sci-chemistry/relax/metadata.xml
deleted file mode 100644
index 00870a63385..00000000000
--- a/sci-chemistry/relax/metadata.xml
+++ /dev/null
@@ -1,30 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemis...@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
- <longdescription>
- The program relax is a software package designed for the study
of molecular
- dynamics through the analysis of experimental NMR data. Organic
molecules,
- proteins, RNA, DNA, sugars, and other biomolecules are all
supported. It
- was originally written for the model-free analysis of protein
dynamics,
- though its scope has been significantly expanded.
-
- relax is a community driven project created by NMR
spectroscopists for
- NMR spectroscopists. It supports a diverse range of analyses:
-
- Model-free analysis - the Lipari and Szabo model-free analysis
of NMR
- relaxation data.
- R1 and R2 - the exponential curve fitting for the calculation
of the
- Rx NMR relaxation rates.
- NOE - the calculation of the steady-state NOE NMR relaxation
data.
- Consistency testing of multiple field NMR relaxation data.
- RSDM - Reduced Spectral Density Mapping.
- Frame order and N-state model - study of domain motions via the
N-state
- model and frame order dynamics theories using
anisotropic
- NMR parameters such as RDCs and PCSs.
- Stereochemistry investigations.
- </longdescription>
-</pkgmetadata>
diff --git a/sci-chemistry/relax/relax-4.0.0-r4.ebuild
b/sci-chemistry/relax/relax-4.0.0-r4.ebuild
deleted file mode 100644
index ba03dbad845..00000000000
--- a/sci-chemistry/relax/relax-4.0.0-r4.ebuild
+++ /dev/null
@@ -1,83 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-WX_GTK_VER="3.0"
-
-inherit eutils multiprocessing python-single-r1 scons-utils toolchain-funcs
wxwidgets virtualx
-
-DESCRIPTION="Molecular dynamics by NMR data analysis"
-HOMEPAGE="https://www.nmr-relax.com/";
-SRC_URI="http://download.gna.org/relax/${P}.src.tar.bz2";
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- ${PYTHON_DEPS}
- $(python_gen_cond_dep "
- dev-python/Numdifftools[\${PYTHON_MULTI_USEDEP}]
- || (
- dev-python/matplotlib-python2[\${PYTHON_MULTI_USEDEP}]
- dev-python/matplotlib[\${PYTHON_MULTI_USEDEP}]
- )
- || (
- dev-python/numpy-python2[\${PYTHON_MULTI_USEDEP}]
- dev-python/numpy[\${PYTHON_MULTI_USEDEP}]
- )
- dev-python/wxpython:${WX_GTK_VER}[\${PYTHON_MULTI_USEDEP}]
- sci-chemistry/pymol[\${PYTHON_MULTI_USEDEP}]
- >=sci-libs/bmrblib-1.0.3[\${PYTHON_MULTI_USEDEP}]
- >=sci-libs/minfx-1.0.11[\${PYTHON_MULTI_USEDEP}]
- || (
- sci-libs/scipy-python2[\${PYTHON_MULTI_USEDEP}]
- sci-libs/scipy[\${PYTHON_MULTI_USEDEP}]
- )
- ")
- sci-chemistry/molmol
- sci-chemistry/vmd
- sci-visualization/grace
- sci-visualization/opendx
- x11-libs/wxGTK:${WX_GTK_VER}[X]"
-DEPEND="${RDEPEND}
- media-gfx/pngcrush
- test? ( ${RDEPEND} )
- "
-
-pkg_setup() {
- python-single-r1_pkg_setup
-}
-
-src_prepare() {
- rm -rf minfx bmrblib extern/numdifftools || die
- tc-export CC
- need-wxwidgets unicode
-}
-
-src_compile() {
- escons
-}
-
-src_test() {
- VIRTUALX_COMMAND="${EPYTHON} ./${PN}.py -x --traceback"
- virtualmake
-}
-
-src_install() {
- dodoc README docs/{CHANGES,COMMITTERS,JOBS,relax.pdf}
-
- python_moduleinto ${PN}
- python_domodule *
-
- rm ${PN} README || die
-
- make_wrapper ${PN}-nmr "${EPYTHON} $(python_get_sitedir)/${PN}/${PN}.py
$@"
-}
