commit: 880eb95640fb5d3d49aecaab8bcceef7bea55ec0 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Mon Jan 4 13:00:59 2021 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Tue Jan 5 06:07:59 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=880eb956
sci-biology/seq_crumbs: remove, py2 only, no commits since 2015 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/seq_crumbs/metadata.xml | 12 ------- sci-biology/seq_crumbs/seq_crumbs-0.1.9.ebuild | 46 -------------------------- 2 files changed, 58 deletions(-) diff --git a/sci-biology/seq_crumbs/metadata.xml b/sci-biology/seq_crumbs/metadata.xml deleted file mode 100644 index f68a1b6fa..000000000 --- a/sci-biology/seq_crumbs/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>mmokr...@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/seq_crumbs/seq_crumbs-0.1.9.ebuild b/sci-biology/seq_crumbs/seq_crumbs-0.1.9.ebuild deleted file mode 100644 index 94ce00a94..000000000 --- a/sci-biology/seq_crumbs/seq_crumbs-0.1.9.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils - -DESCRIPTION="Filter, split and trim NGS sequence data" -HOMEPAGE="https://github.com/JoseBlanca/seq_crumbs"; -SRC_URI="https://github.com/JoseBlanca/"${PN}"/archive/v"${PV}".tar.gz"; - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND=" - >=sci-biology/biopython-1.60 - >=sci-biology/pysam-0.8 - >=dev-python/rpy-2 - dev-python/matplotlib - dev-python/configobj - dev-python/toolz" -RDEPEND="${DEPEND}" - -# TODO fix file collisions -# * Detected file collision(s): -# * -# * /usr/share/man/man1/index.1.bz2 -# * /usr/share/man/man1/install.1.bz2 -# * -# * Searching all installed packages for file collisions... -# * -# * Press Ctrl-C to Stop -# * -# * sys-apps/coreutils-8.29:0::gentoo -# * /usr/share/man/man1/install.1.bz2 -# * -# * media-libs/netpbm-10.76.00:0::gentoo -# * /usr/share/man/man1/index.1.bz2 -src_prepare(){ - sed -e "s#sys.prefix#os.getenv('ED')+'/usr/'#" -i setup.py || die - default -}
