commit: b348e7c16cffa197e2592cfbf89666d603e5a346 Author: Alessandro Barbieri <lssndrbarbieri <AT> gmail <DOT> com> AuthorDate: Wed Apr 21 01:25:08 2021 +0000 Commit: Joonas Niilola <juippis <AT> gentoo <DOT> org> CommitDate: Tue Jun 15 13:03:05 2021 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b348e7c1
sys-cluster/openmpi: add peruse and libompitrace useflags Closes: https://bugs.gentoo.org/784278 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Alessandro Barbieri <lssndrbarbieri <AT> gmail.com> Closes: https://github.com/gentoo/gentoo/pull/20480 Signed-off-by: Joonas Niilola <juippis <AT> gentoo.org> sys-cluster/openmpi/metadata.xml | 6 +- sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild | 176 ++++++++++++++++++++++++++++ 2 files changed, 180 insertions(+), 2 deletions(-) diff --git a/sys-cluster/openmpi/metadata.xml b/sys-cluster/openmpi/metadata.xml index e319ff476a1..32314bce38b 100644 --- a/sys-cluster/openmpi/metadata.xml +++ b/sys-cluster/openmpi/metadata.xml @@ -10,10 +10,12 @@ <flag name="cuda">Add GPU direct support</flag> <flag name="heterogeneous">Enable features required for heterogeneous platform support</flag> - <flag name="romio">Build the ROMIO MPI-IO component</flag> + <flag name="libompitrace">Enable support for contributed package libompitrace</flag> <flag name="mpi-threads">Enable MPI_THREAD_MULTIPLE</flag> <flag name="numa">Enable numactl to allow binding processes to CPUs</flag> - <flag name="vt">Enable bundled VampirTrace support</flag> <flag name="pbs">Add support for the Portable Batch System (PBS)</flag> + <flag name="peruse">Enable PERUSE interface</flag> + <flag name="romio">Build the ROMIO MPI-IO component</flag> + <flag name="vt">Enable bundled VampirTrace support</flag> </use> </pkgmetadata> diff --git a/sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild new file mode 100644 index 00000000000..e044b27efaa --- /dev/null +++ b/sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild @@ -0,0 +1,176 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +FORTRAN_NEEDED=fortran + +inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib multilib-minimal + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="https://www.open-mpi.org"; +SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux" +IUSE="cma cuda cxx fortran heterogeneous ipv6 java +libompitrace peruse romio + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" + +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + >=dev-libs/libevent-2.0.22:=[${MULTILIB_USEDEP},threads] + dev-libs/libltdl:0[${MULTILIB_USEDEP}] + >=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP}] + >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= ) + openmpi_fabrics_ofed? ( || ( sys-cluster/rdma-core sys-fabric/ofed:* ) ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( || ( sys-cluster/rdma-core sys-fabric/librdmacm:* ) )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +MULTILIB_WRAPPED_HEADERS=( + /usr/include/mpi.h + /usr/include/openmpi/ompi/mpi/java/mpiJava.h +) + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die +} + +multilib_src_configure() { + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + local myconf=( + --enable-mpi-fortran=$(usex fortran all no) + --enable-orterun-prefix-by-default + --enable-pretty-print-stacktrace + + --sysconfdir="${EPREFIX}/etc/${PN}" + + --with-hwloc="${EPREFIX}/usr" + --with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)" + --with-libltdl="${EPREFIX}/usr" + --with-libevent="${EPREFIX}/usr" + --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" + + $(use_enable cxx mpi-cxx) + $(use_enable heterogeneous) + $(use_enable ipv6) + $(use_enable libompitrace) + $(use_enable peruse) + $(use_enable romio io-romio) + + $(use_with cma) + + $(multilib_native_use_enable java mpi-java) + $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) + $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) + $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) + $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) + + $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) + $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) + $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) + $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) + $(multilib_native_use_with openmpi_rm_pbs tm) + $(multilib_native_use_with openmpi_rm_slurm slurm) + ) + ECONF_SOURCE=${S} econf "${myconf[@]}" +} + +multilib_src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} + +multilib_src_install() { + default + + # fortran header cannot be wrapped (bug #540508), workaround part 1 + if multilib_is_native_abi && use fortran; then + mkdir "${T}"/fortran || die + mv "${ED}"/usr/include/mpif* "${T}"/fortran || die + else + # some fortran files get installed unconditionally + rm \ + "${ED}"/usr/include/mpif* \ + "${ED}"/usr/bin/mpif* \ + || die + fi +} + +multilib_src_install_all() { + # fortran header cannot be wrapped (bug #540508), workaround part 2 + if use fortran; then + mv "${T}"/fortran/mpif* "${ED}"/usr/include || die + fi + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die + + if use java; then + local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + einstalldocs +}
