commit: 86a55f2707b1daa78e8d7e0666756e95ef588d47 Author: Pacho Ramos <pacho <AT> gentoo <DOT> org> AuthorDate: Thu Sep 2 11:48:56 2021 +0000 Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org> CommitDate: Thu Sep 2 12:00:44 2021 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=86a55f27
sci-chemistry/dssp: Fix boost compat for dssp-2 dssp-2 is still needed by gromacs, try to keep it whenever possible then Closes: https://bugs.gentoo.org/802417 Closes: https://bugs.gentoo.org/808669 Package-Manager: Portage-3.0.22, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org> sci-chemistry/dssp/dssp-2.2.1-r3.ebuild | 41 +++++++++++++++++++++++++++++++++ sci-chemistry/dssp/files/30-dssp | 1 + 2 files changed, 42 insertions(+) diff --git a/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild new file mode 100644 index 00000000000..17a89bb51ff --- /dev/null +++ b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit toolchain-funcs + +DESCRIPTION="The protein secondary structure standard" +HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/"; +SRC_URI="ftp://ftp.cmbi.ru.nl/pub/molbio/software/dssp-2/${P}.tgz"; + +LICENSE="Boost-1.0" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND="dev-libs/boost:=[threads(+)]" +DEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}"/${PN}-2.1.0-gentoo.patch + "${FILESDIR}"/${PN}-2.2.1-boost-1.65-tr1-removal.patch +) + +src_configure() { + tc-export CXX + + cat >> make.config <<- EOF || die + BOOST_LIB_DIR = "${EPREFIX}/usr/$(get_libdir)" + BOOST_INC_DIR = "${EPREFIX}/usr/include" + EOF +} + +src_install() { + dobin mkdssp + dosym mkdssp /usr/bin/dssp + doman doc/mkdssp.1 + dodoc README.txt changelog + + doenvd "${FILESDIR}"/30-${PN} +} diff --git a/sci-chemistry/dssp/files/30-dssp b/sci-chemistry/dssp/files/30-dssp new file mode 100644 index 00000000000..e0a5e0ce562 --- /dev/null +++ b/sci-chemistry/dssp/files/30-dssp @@ -0,0 +1 @@ +DSSP=/usr/bin/dssp \ No newline at end of file
