commit: 1e46e06ae70156fb4d4db508c727b1812e6a7aa4 Author: Sam James <sam <AT> gentoo <DOT> org> AuthorDate: Mon Jan 3 00:20:38 2022 +0000 Commit: Sam James <sam <AT> gentoo <DOT> org> CommitDate: Mon Jan 3 00:21:48 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1e46e06a
sys-cluster/openmpi: disable heterogeneous (unsupported, broken) Upstream have let us know (thank you!) that heterogeneous should _not_ be used for anything before 5.0.x (which is not out yet). We can look at restoring support in the future once it is ready upstream. Upstream documentation has been fixed to reflect this too. Closes: https://bugs.gentoo.org/828123 Thanks-to: Jeff Squyres <jsquyres <AT> cisco.com> Signed-off-by: Sam James <sam <AT> gentoo.org> .../files/openmpi-4.1.2-missing-includes.patch | 32 ---------------------- sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild | 6 ++-- sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild | 6 ++-- sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild | 6 ++-- sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild | 6 ++-- sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild | 6 ++-- sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild | 6 ++-- sys-cluster/openmpi/openmpi-4.0.7.ebuild | 6 ++-- sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild | 6 ++-- sys-cluster/openmpi/openmpi-4.1.2.ebuild | 12 ++++---- 10 files changed, 30 insertions(+), 62 deletions(-) diff --git a/sys-cluster/openmpi/files/openmpi-4.1.2-missing-includes.patch b/sys-cluster/openmpi/files/openmpi-4.1.2-missing-includes.patch deleted file mode 100644 index 89abc049df4e..000000000000 --- a/sys-cluster/openmpi/files/openmpi-4.1.2-missing-includes.patch +++ /dev/null @@ -1,32 +0,0 @@ -https://github.com/open-mpi/ompi/commit/927e9aa97373dac652f9cba4813e6ee609ca2830 -https://bugs.gentoo.org/828123 - -From: George Bosilca <bosi...@icl.utk.edu> -Date: Tue, 23 Nov 2021 14:28:11 -0500 -Subject: [PATCH] Fix compile failure with enable-heterogeneous. - -An internal header file was missing, leading to an incomplete type. - -Fixes #9697. - -Signed-off-by: George Bosilca <bosi...@icl.utk.edu> ---- a/ompi/mca/coll/base/coll_base_alltoall.c -+++ b/ompi/mca/coll/base/coll_base_alltoall.c -@@ -29,6 +29,7 @@ - #include "mpi.h" - #include "ompi/constants.h" - #include "ompi/datatype/ompi_datatype.h" -+#include "opal/datatype/opal_convertor_internal.h" - #include "ompi/communicator/communicator.h" - #include "ompi/mca/coll/coll.h" - #include "ompi/mca/coll/base/coll_tags.h" ---- a/ompi/mca/coll/base/coll_base_alltoallv.c -+++ b/ompi/mca/coll/base/coll_base_alltoallv.c -@@ -31,6 +31,7 @@ - #include "mpi.h" - #include "ompi/constants.h" - #include "ompi/datatype/ompi_datatype.h" -+#include "opal/datatype/opal_convertor_internal.h" - #include "ompi/communicator/communicator.h" - #include "ompi/mca/coll/coll.h" - #include "ompi/mca/coll/base/coll_tags.h" diff --git a/sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild index 7dedbcb532f9..6218dc7f7a65 100644 --- a/sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild +++ b/sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux" -IUSE="cma cuda cxx fortran heterogeneous ipv6 java romio +IUSE="cma cuda cxx fortran ipv6 java romio ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) @@ -111,7 +111,7 @@ multilib_src_configure() { $(use_with cma) \ $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \ $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ + --disable-heterogeneous \ $(use_enable ipv6) \ $(multilib_native_use_enable java mpi-java) \ $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ diff --git a/sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild index 7dedbcb532f9..6218dc7f7a65 100644 --- a/sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild +++ b/sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux" -IUSE="cma cuda cxx fortran heterogeneous ipv6 java romio +IUSE="cma cuda cxx fortran ipv6 java romio ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) @@ -111,7 +111,7 @@ multilib_src_configure() { $(use_with cma) \ $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \ $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ + --disable-heterogeneous \ $(use_enable ipv6) \ $(multilib_native_use_enable java mpi-java) \ $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ diff --git a/sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild index 7dedbcb532f9..6218dc7f7a65 100644 --- a/sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild +++ b/sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux" -IUSE="cma cuda cxx fortran heterogeneous ipv6 java romio +IUSE="cma cuda cxx fortran ipv6 java romio ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) @@ -111,7 +111,7 @@ multilib_src_configure() { $(use_with cma) \ $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \ $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ + --disable-heterogeneous \ $(use_enable ipv6) \ $(multilib_native_use_enable java mpi-java) \ $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ diff --git a/sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild b/sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild index 910b08a8e8f6..3ab02e1aff6a 100644 --- a/sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild +++ b/sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux" -IUSE="cma cuda cxx fortran heterogeneous ipv6 java romio +IUSE="cma cuda cxx fortran ipv6 java romio ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) @@ -111,7 +111,7 @@ multilib_src_configure() { $(use_with cma) \ $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \ $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ + --disable-heterogeneous \ $(use_enable ipv6) \ $(multilib_native_use_enable java mpi-java) \ $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ diff --git a/sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild b/sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild index 6609fda95cfc..dedc2ebe1349 100644 --- a/sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild +++ b/sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P LICENSE="BSD" SLOT="0" KEYWORDS="~alpha amd64 arm ~ia64 ppc ppc64 ~riscv sparc x86 ~amd64-linux" -IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio +IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) @@ -112,7 +112,7 @@ multilib_src_configure() { --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" $(use_enable cxx mpi-cxx) - $(use_enable heterogeneous) + --disable-heterogeneous $(use_enable ipv6) $(use_enable libompitrace) $(use_enable peruse) diff --git a/sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild index 93df7d8495cc..e7d49f6d7e45 100644 --- a/sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild +++ b/sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -32,7 +32,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux" -IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio +IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) @@ -113,7 +113,7 @@ multilib_src_configure() { --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" $(use_enable cxx mpi-cxx) - $(use_enable heterogeneous) + --disable-heterogeneous $(use_enable ipv6) $(use_enable libompitrace) $(use_enable peruse) diff --git a/sys-cluster/openmpi/openmpi-4.0.7.ebuild b/sys-cluster/openmpi/openmpi-4.0.7.ebuild index 93df7d8495cc..e7d49f6d7e45 100644 --- a/sys-cluster/openmpi/openmpi-4.0.7.ebuild +++ b/sys-cluster/openmpi/openmpi-4.0.7.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -32,7 +32,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux" -IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio +IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) @@ -113,7 +113,7 @@ multilib_src_configure() { --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" $(use_enable cxx mpi-cxx) - $(use_enable heterogeneous) + --disable-heterogeneous $(use_enable ipv6) $(use_enable libompitrace) $(use_enable peruse) diff --git a/sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild b/sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild index 6652c805f75a..aae744d9642b 100644 --- a/sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild +++ b/sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -32,7 +32,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux" -IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio +IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) @@ -115,7 +115,7 @@ multilib_src_configure() { --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" $(use_enable cxx mpi-cxx) - $(use_enable heterogeneous) + --disable-heterogeneous $(use_enable ipv6) $(use_enable libompitrace) $(use_enable peruse) diff --git a/sys-cluster/openmpi/openmpi-4.1.2.ebuild b/sys-cluster/openmpi/openmpi-4.1.2.ebuild index 036f1cbe8cb6..314ce22c8b3a 100644 --- a/sys-cluster/openmpi/openmpi-4.1.2.ebuild +++ b/sys-cluster/openmpi/openmpi-4.1.2.ebuild @@ -32,7 +32,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux" -IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio +IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) @@ -71,10 +71,6 @@ MULTILIB_WRAPPED_HEADERS=( /usr/include/openmpi/mpiext/mpiext_cuda_c.h ) -PATCHES=( - "${FILESDIR}"/${PN}-4.1.2-missing-includes.patch -) - pkg_setup() { fortran-2_pkg_setup java-pkg-opt-2_pkg_setup @@ -118,8 +114,12 @@ multilib_src_configure() { --with-libevent="${EPREFIX}/usr" --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" + # Re-enable for 5.0! + # See https://github.com/open-mpi/ompi/issues/9697#issuecomment-1003746357 + # and https://bugs.gentoo.org/828123#c14 + --disable-heterogeneous + $(use_enable cxx mpi-cxx) - $(use_enable heterogeneous) $(use_enable ipv6) $(use_enable libompitrace) $(use_enable peruse)
