commit: acc21d1b10bd722943d3d422baeeadb52098112c Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue Jan 25 13:11:45 2022 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue Jan 25 13:11:45 2022 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=acc21d1b
sci-biology/oases: drop dead package last update 2015 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/oases/files/Makefile.patch | 15 ------------- sci-biology/oases/metadata.xml | 12 ---------- sci-biology/oases/oases-0.2.08.ebuild | 40 ---------------------------------- sci-biology/oases/oases-9999.ebuild | 40 ---------------------------------- 4 files changed, 107 deletions(-) diff --git a/sci-biology/oases/files/Makefile.patch b/sci-biology/oases/files/Makefile.patch deleted file mode 100644 index fcd0842ff..000000000 --- a/sci-biology/oases/files/Makefile.patch +++ /dev/null @@ -1,15 +0,0 @@ ---- a/Makefile 2016-04-10 22:34:31.976222662 +0200 -+++ b/Makefile 2016-04-10 22:37:49.636225327 +0200 -@@ -1,8 +1,8 @@ --CC = gcc --CFLAGS = -Wall --DEBUG = -g -+CC ?= gcc -+CFLAGS ?= -Wall -+DEBUG ?= -g - LIBS = -lm --OPT = -O3 -+#OPT = -O3 - export MAXKMERLENGTH = 64 - export CATEGORIES = 2 - DEF = -D MAXKMERLENGTH=$(MAXKMERLENGTH) -D CATEGORIES=$(CATEGORIES) diff --git a/sci-biology/oases/metadata.xml b/sci-biology/oases/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/oases/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>mmokr...@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/oases/oases-0.2.08.ebuild b/sci-biology/oases/oases-0.2.08.ebuild deleted file mode 100644 index 74ad30f59..000000000 --- a/sci-biology/oases/oases-0.2.08.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="De novo transcriptome assembler" -HOMEPAGE="http://www.ebi.ac.uk/~zerbino/oases"; -if [ "$PV" == "9999" ]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/dzerbino/oases.git"; - SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf"; -else - SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/oases_0.2.08.tgz - http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf"; - S="${WORKDIR}/oases_0.2.8" - KEYWORDS="" - # fails to find globals.h, but which globals.h does it want? -fi - -LICENSE="GPL-3" -SLOT="0" - -DEPEND="" -RDEPEND="${DEPEND} - >=sci-biology/velvet-1.2.08" - -PATCHES=( - "${FILESDIR}/Makefile.patch" -) - -src_prepare(){ - default - sed -e 's#cleanobj velvet oases doc#oases#' -i Makefile || die -} - -src_install(){ - dobin oases - dodoc README.md - dodoc "${DISTDIR}"/OasesManual.pdf -} diff --git a/sci-biology/oases/oases-9999.ebuild b/sci-biology/oases/oases-9999.ebuild deleted file mode 100644 index 74ad30f59..000000000 --- a/sci-biology/oases/oases-9999.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="De novo transcriptome assembler" -HOMEPAGE="http://www.ebi.ac.uk/~zerbino/oases"; -if [ "$PV" == "9999" ]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/dzerbino/oases.git"; - SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf"; -else - SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/oases_0.2.08.tgz - http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf"; - S="${WORKDIR}/oases_0.2.8" - KEYWORDS="" - # fails to find globals.h, but which globals.h does it want? -fi - -LICENSE="GPL-3" -SLOT="0" - -DEPEND="" -RDEPEND="${DEPEND} - >=sci-biology/velvet-1.2.08" - -PATCHES=( - "${FILESDIR}/Makefile.patch" -) - -src_prepare(){ - default - sed -e 's#cleanobj velvet oases doc#oases#' -i Makefile || die -} - -src_install(){ - dobin oases - dodoc README.md - dodoc "${DISTDIR}"/OasesManual.pdf -}
