commit: a70b50ddac48495aa2104769f34d19c007cf1861
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 6 19:29:08 2023 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Apr 6 19:29:08 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a70b50dd
sci-biology/bcftools: drop 1.16
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/bcftools/Manifest | 1 -
sci-biology/bcftools/bcftools-1.16.ebuild | 42 -------------------------------
2 files changed, 43 deletions(-)
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest
index 8d5aa1eec079..0f3c24a476a9 100644
--- a/sci-biology/bcftools/Manifest
+++ b/sci-biology/bcftools/Manifest
@@ -1,2 +1 @@
-DIST bcftools-1.16.tar.bz2 7325862 BLAKE2B
0e1240448d4efb352d3d0cd83decd286f7544fff3676f0a5cca51dec9c445c47c37ac24a3317aa7b41182c576e7e57dba460fc98aca069dc2f8fe0625c0b0f06
SHA512
998d5ac941f73798c35dd1db7ac7aba9067f275bd3055728aabfd8edd9f40484130df1fb57621d1a762a57b28ffcac358570915c341d420ae6f12bd17f7651a3
DIST bcftools-1.17.tar.bz2 7538043 BLAKE2B
82f65d53ebea0527ff000329f158ebdb1d603e04841a096cf8ca0434e7a5694ab43da7959ee10e9cb29328bf82301c03200e1203578a74e2e1118856b2641502
SHA512
39ae44a682e626a5261900e9412170a269e460b559d6607db697e6a12b1e512ffb3bdeb3486413e19b8adca26a8ccbb2bd4af24459decb74592c54473d2c6a68
diff --git a/sci-biology/bcftools/bcftools-1.16.ebuild
b/sci-biology/bcftools/bcftools-1.16.ebuild
deleted file mode 100644
index 6adee705bb46..000000000000
--- a/sci-biology/bcftools/bcftools-1.16.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{9..11} )
-
-inherit python-single-r1
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org";
-SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2";
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- dev-lang/perl
- $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]')
- =sci-libs/htslib-$(ver_cut 1-2)*:=
- sys-libs/zlib
- ${PYTHON_DEPS}"
-DEPEND="${RDEPEND}"
-BDEPEND="${PYTHON_DEPS}"
-
-src_prepare() {
- default
-
- python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py
-
- # remove bundled htslib
- rm -r htslib-* || die
-}
-
-src_configure() {
- econf \
- --disable-bcftools-plugins \
- --disable-libgsl \
- --with-htslib=system
-}
