commit: e8705e27aa47338599ae10b2f412b316ddf42a31 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Fri Apr 21 08:54:22 2023 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Fri Apr 21 08:54:22 2023 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e8705e27
sci-chemistry/prekin: treeclean Closes: https://bugs.gentoo.org/862438 Signed-off-by: David Seifert <soap <AT> gentoo.org> profiles/package.mask | 6 --- sci-chemistry/prekin/Manifest | 1 - .../prekin/files/6.51.081122-Makefile.patch | 39 ----------------- .../prekin/files/6.51.081122-overflow.patch | 26 ------------ .../files/prekin-6.51.081122-fno-common.patch | 34 --------------- sci-chemistry/prekin/metadata.xml | 8 ---- sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 49 ---------------------- 7 files changed, 163 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 35164dc68d1c..127281247cf6 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -482,12 +482,6 @@ net-analyzer/traceroute-nanog # Removal on 2023-04-17. Bug #871711. media-plugins/vdr-remotetimers -# David Seifert <s...@gentoo.org> (2023-03-18) -# Upstream disappeared, release is over 14 years old, only Gentoo still -# carries this, breaks with modern C under Clang, no revdeps. -# Removal on 2023-04-17. Bug #862438. -sci-chemistry/prekin - # Sam James <s...@gentoo.org> (2023-03-16) # Breaks building C++ consumers. See bug #901211 and bug #901035. # Please upgrade to glib-2.76.0-r1. diff --git a/sci-chemistry/prekin/Manifest b/sci-chemistry/prekin/Manifest deleted file mode 100644 index 79339ac8a7fa..000000000000 --- a/sci-chemistry/prekin/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST prekin.6.51.081122.src.tgz 350756 BLAKE2B 657706e83d06be74f2565abb4db1c886c19247b736200cf309cc143f71c7f47e4c85d869b286ec3e250ecb0d714e1454044836001aa6b883513d9149683bb320 SHA512 9a41f30a9de955c78ee5685807482b2b073705643cceb53bf57eaf7c0c4753dc88fa8dc19f09d4c8a07124c3c3c73716f29126860ae37ff4dd6fb6178b829d1f diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch deleted file mode 100644 index b562f27e51d3..000000000000 --- a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch +++ /dev/null @@ -1,39 +0,0 @@ ---- a/Makefile.linux -+++ b/Makefile.linux -@@ -1,15 +1,15 @@ - # --CFLAGS = -I/usr/X11R6/include -+CFLAGS += -I/usr/X11R6/include - - ifeq ($(MAKECMDGOALS),debug) - CFLAGS = -g -I/usr/X11R6/include - endif - --LIBS = -L/usr/lib -L/usr/X11R6/lib -lXmu -lXm -lXt -lSM -lICE -lXext -lX11 -+LIBS = -L/usr/GENTOOLIBDIR -L/usr/X11R6/lib -lXmu -lXm -lXt -lSM -lICE -lXext -lX11 - - ifeq ($(MAKECMDGOALS),nogui) --CFLAGS = -D NOGUI -I/usr/X11R6/include --LIBS = -L/usr/lib -L/usr/X11R6/lib -lXmu -lXt -lSM -lICE -lXext -lX11 -+CFLAGS += -D NOGUI -I/usr/X11R6/include -+LIBS = -L/usr/GENTOOLIBDIR -L/usr/X11R6/lib -lXmu -lXt -lSM -lICE -lXext -lX11 - endif - - FIN = -lm -pthread #for RH9.0, ok for RH7.3 & RH8.0 -@@ -26,13 +26,13 @@ OBJS = PKINANGL.o PKINCRTL.o PKINCSBS.o PKINCSUB.o PKINCOUT.o PKINMENU.o PKINROT - # Commands specific to clients created by this Makefile - - prekin: $(OBJS) -- cc -o prekin $(CFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) -+ cc -o prekin $(CFLAGS) $(LDFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) - - debug: $(OBJS) -- cc -o prekin $(CFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) -+ cc -o prekin $(CFLAGS) $(LDFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) - - nogui: $(OBJS) -- cc -o prekin $(CFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) -+ cc -o prekin $(CFLAGS) $(LDFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN) - - clean: - rm *.o diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch b/sci-chemistry/prekin/files/6.51.081122-overflow.patch deleted file mode 100644 index 1c6ded314315..000000000000 --- a/sci-chemistry/prekin/files/6.51.081122-overflow.patch +++ /dev/null @@ -1,26 +0,0 @@ ---- a/PKIN.h -+++ b/PKIN.h -@@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext; - EXTERN char aspectstrnext[MAXaspects+3]; /*in parens: (XXXX)*/ - - /* possible overlap with earlier PREKIN variables */ --EXTERN char word[256],texts[256],temps[256]; --EXTERN char alertstr[256],alertstr2[256],alertstr3[256]; -+EXTERN char word[256],texts[256],temps[512]; -+EXTERN char alertstr[1024],alertstr2[256],alertstr3[256]; - EXTERN char oldstr[256],olderstr[256],newstr[256],InfoStr[256],MolNameStr[16]; - EXTERN char NameStr[256],OutfileStr[256],ScriptinStr[256],ShortNameStr[256]; - EXTERN char DirStr[256],PDBfileStr[256],helpoutStr[256]; /*040425 helpout*/ -diff --git a/PKINCOUT.c b/PKINCOUT.c -index af8eb24..a9f3a5f 100755 ---- a/PKINCOUT.c -+++ b/PKINCOUT.c -@@ -17,7 +17,7 @@ static float VRMLx=0,VRMLy=0,VRMLz=0; - void writeoutput() - { - char cntl[5]; /* 4 actual characters */ -- char kol[20],extra[256],aname[13]; -+ char kol[20],extra[256],aname[32]; - char chain[32],atoms[32],cpks[32],hygen[32],hbond[32]; - char subname[32],allstr[32]; - char mastername[32]; /*051128*/ diff --git a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch deleted file mode 100644 index 207d30152027..000000000000 --- a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch +++ /dev/null @@ -1,34 +0,0 @@ -https://bugs.gentoo.org/707310 ---- a/PKININIT.c -+++ b/PKININIT.c -@@ -65,6 +65,8 @@ void writeversiontooutput(void); /*041011*/ - void writechangestooutput(void); /*040215*/ - void writecmdhelptooutput(void); /*040425*/ - -+extern int Lribbonnew; -+ - static char* prekinchanges[] = - {"\r" - ,"020514 Cbeta:Superpos,NB:Prekin,IOmage\r" ---- a/PKINRIBB.c -+++ b/PKINRIBB.c -@@ -6,6 +6,8 @@ - #define PKINRIBB - #include "PKINRIBB.h" - #undef PKINRIBB -+ -+extern int Lribbonnew; - - /*{{{--NOTE-- version, etc. */ - /*051025 for now, just work with one model, and let prekin's levels==sections*/ ---- a/PKINRIBB.h -+++ b/PKINRIBB.h -@@ -5,7 +5,7 @@ - #define PKINRIBB extern - #endif - --PKINRIBB int Lribbonnew; /*051025 new ribbon structures: PKINRIBB*/ -+extern int Lribbonnew; /*051025 new ribbon structures: PKINRIBB*/ - - #define CORDER 4 /*order of the B-spline defined here*/ - diff --git a/sci-chemistry/prekin/metadata.xml b/sci-chemistry/prekin/metadata.xml deleted file mode 100644 index b71795dbfba5..000000000000 --- a/sci-chemistry/prekin/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> -<maintainer type="project"> - <email>sci-chemis...@gentoo.org</email> - <name>Gentoo Chemistry Project</name> -</maintainer> -</pkgmetadata> diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild deleted file mode 100644 index d6f5e98ced6b..000000000000 --- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild +++ /dev/null @@ -1,49 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit toolchain-funcs - -MY_P=${PN}.${PV} -DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files" -HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php"; -SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz"; - -LICENSE="richardson" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" -IUSE="X" - -RDEPEND=" - x11-libs/libXext - x11-libs/libXmu - x11-libs/libXt - x11-libs/libX11 - X? ( >=x11-libs/motif-2.3:0= )" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${MY_P}" - -PATCHES=( - "${FILESDIR}"/${PV}-Makefile.patch - "${FILESDIR}"/${PV}-overflow.patch - "${FILESDIR}"/${P}-fno-common.patch -) - -src_configure() { - tc-export CC - - sed \ - -e 's:cc:$(CC):g' \ - -e "s:GENTOOLIBDIR:$(get_libdir):g" \ - Makefile.linux > Makefile || die -} - -src_compile() { - emake $(usex X ${PN} nogui) -} - -src_install() { - dobin prekin -}
