commit: df1b752e2d45731e3ed75840ec6b2e04e314bd64 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue Apr 25 11:25:25 2023 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue Apr 25 11:25:25 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=df1b752e
sci-biology/signalp: treeclean Bug: https://bugs.gentoo.org/902383 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> profiles/package.mask | 1 - sci-biology/signalp/metadata.xml | 8 ------ sci-biology/signalp/signalp-3.0.ebuild | 46 ---------------------------------- 3 files changed, 55 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index ba856cb7f..51da8d80c 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -41,7 +41,6 @@ sci-biology/RSeQC # Andrew Ammerlaan <andrewammerl...@gentoo.org) (10 Feb 2023) # Fetch restricted ebuilds without proper manifest entry -sci-biology/signalp sci-biology/tmhmm sci-chemistry/ligplot+ sci-chemistry/nmrview diff --git a/sci-biology/signalp/metadata.xml b/sci-biology/signalp/metadata.xml deleted file mode 100644 index 8417d1580..000000000 --- a/sci-biology/signalp/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/signalp/signalp-3.0.ebuild b/sci-biology/signalp/signalp-3.0.ebuild deleted file mode 100644 index dcd83d920..000000000 --- a/sci-biology/signalp/signalp-3.0.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Prediction of signal peptide cleavage sites in amino acid sequences" -HOMEPAGE="http://www.cbs.dtu.dk/services/SignalP/"; -SRC_URI="${P}.Linux.tar.Z" - -LICENSE="signalp" -SLOT="0" -IUSE="gnuplot" -KEYWORDS="~amd64 ~x86" - -DEPEND="" -RDEPEND="gnuplot? ( - sci-visualization/gnuplot - media-libs/netpbm )" - -RESTRICT="fetch strip" - -pkg_nofetch() { - einfo "Please visit ${HOMEPAGE} and obtain the file" - einfo "\"${SRC_URI}\", then place it into your DISTDIR folder" -} - -src_prepare() { - default - sed -i -e '/SIGNALP=/ s/\/usr//' \ - -e '/TMPDIR=/ s/$SIGNALP//' "${S}/signalp" || die - sed -i 's/nawk/gawk/' "${S}"/bin/* || die -} - -src_install() { - dobin signalp - insinto /opt/${P} - doins -r bin hmm how mod syn* test - exeinto /opt/${P}/bin - doexe bin/* - exeinto /opt/${P}/hmm - doexe hmm/* - exeinto /opt/${P}/how - doexe how/* - doman signalp.1 - dodoc *readme -}
