commit: 3f8ff1293b126e52932e381d68d6451f65f11229 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue May 2 12:44:23 2023 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue May 2 12:44:23 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3f8ff129
sci-biology/neuroconv: treeclean Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/neuroconv/metadata.xml | 21 ----------- sci-biology/neuroconv/neuroconv-0.2.4.ebuild | 56 ---------------------------- 2 files changed, 77 deletions(-) diff --git a/sci-biology/neuroconv/metadata.xml b/sci-biology/neuroconv/metadata.xml deleted file mode 100644 index efd00647e..000000000 --- a/sci-biology/neuroconv/metadata.xml +++ /dev/null @@ -1,21 +0,0 @@ -<?xml version='1.0' encoding='UTF-8'?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>gen...@chymera.eu</email> - <name>Horea Christian</name> - </maintainer> - <maintainer type="project"> - <email>s...@gentoo.org</email> - <name>Gentoo Science Project</name> - </maintainer> - <use> - <flag name="ecephys">Extracellular electrophysiology interfaces</flag> - <flag name="icephys">Intracellular electrophysiology interfaces</flag> - <flag name="ophys">Optical physiology interfaces</flag> - </use> - <upstream> - <remote-id type="github">catalystneuro/roiextractors</remote-id> - <remote-id type="pypi">roiextractors</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/neuroconv/neuroconv-0.2.4.ebuild b/sci-biology/neuroconv/neuroconv-0.2.4.ebuild deleted file mode 100644 index 39046a1a5..000000000 --- a/sci-biology/neuroconv/neuroconv-0.2.4.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 2021-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..10} ) -DISTUTILS_USE_PEP517=setuptools -inherit distutils-r1 - -DESCRIPTION="Create NWB files from proprietary formats." -HOMEPAGE="https://github.com/catalystneuro/neuroconv"; -SRC_URI="https://github.com/catalystneuro/neuroconv/archive/refs/tags/v${PV}.tar.gz -> ${P}.gh.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64" -IUSE="+ecephys +icephys +ophys" - -RDEPEND=" - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/hdmf[${PYTHON_USEDEP}] - dev-python/jsonschema[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/psutil[${PYTHON_USEDEP}] - dev-python/pynwb[${PYTHON_USEDEP}] - dev-python/pyyaml[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/tqdm[${PYTHON_USEDEP}] - dev-vcs/dandi-cli[${PYTHON_USEDEP}] - ecephys? ( - dev-python/spikeinterface[${PYTHON_USEDEP}] - ) - icephys? ( - dev-python/neo[${PYTHON_USEDEP}] - ) - ophys? ( - sci-biology/roiextractors[${PYTHON_USEDEP}] - ) -" -BDEPEND=" - test? ( - dev-python/parameterized[${PYTHON_USEDEP}] - ) -" - -distutils_enable_tests pytest - -python_test() { - # Additional tests require complex data getting infrastructure, ophys tests still have issues: - # https://github.com/catalystneuro/neuroconv/issues/305 - local my_tests=( "tests/test_minimal" ) - use ecephys && my_tests+=( "tests/test_ecephys" ) - #use ophys && my_tests+=( "tests/test_ophys" ) - epytest ${my_tests[*]// /|} -}
