commit: 7f8ffd5d9ba726d2502d2e5d0f4046d6333477ac Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Jan 7 22:04:41 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Jan 7 22:04:41 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7f8ffd5d
Initial ebuild --- sci-biology/pb-jelly/ChangeLog | 10 ++++++++++ sci-biology/pb-jelly/metadata.xml | 9 +++++++++ sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild | 22 ++++++++++++++++++++++ 3 files changed, 41 insertions(+) diff --git a/sci-biology/pb-jelly/ChangeLog b/sci-biology/pb-jelly/ChangeLog new file mode 100644 index 0000000..7e85562 --- /dev/null +++ b/sci-biology/pb-jelly/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/pb-jelly +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*pb-jelly-14.9.9 (07 Jan 2015) + + 07 Jan 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +pb-jelly-14.9.9.ebuild, +metadata.xml: + initial ebuild + diff --git a/sci-biology/pb-jelly/metadata.xml b/sci-biology/pb-jelly/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/pb-jelly/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild new file mode 100644 index 0000000..78ddcfe --- /dev/null +++ b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild @@ -0,0 +1,22 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Close gaps using PacBio RS or 454 FLX+ reads" +HOMEPAGE="https://www.hgsc.bcm.edu/software/jelly"; +SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBSuite_14.9.9.tgz -> pb-jelly-14.9.9.tgz" + +LICENSE="" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="sci-biology/blasr + <=dev-python/networkx-1.1" # upstream says "Versions past v1.1 have been shown to have many issues." +RDEPEND="${DEPEND}"
