commit: 806d5e4ebca3f285986f2e1e0f1125f835fdf196 Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org> AuthorDate: Thu Jan 15 17:43:04 2015 +0000 Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org> CommitDate: Thu Jan 15 17:43:04 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=806d5e4e
Revert "Revert "sci-biology/bcftools: new package: compiles against bundled sci-libs/htslib-1.1 but does not install it"" This reverts commit 1ed8090c989cf72046e206e4daaf02222c4029a5. --- sci-biology/bcftools/ChangeLog | 10 ++++++++++ sci-biology/bcftools/bcftools-1.1.ebuild | 26 ++++++++++++++++++++++++++ sci-biology/bcftools/metadata.xml | 9 +++++++++ 3 files changed, 45 insertions(+) diff --git a/sci-biology/bcftools/ChangeLog b/sci-biology/bcftools/ChangeLog new file mode 100644 index 0000000..4e0a781 --- /dev/null +++ b/sci-biology/bcftools/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/bcftools +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*bcftools-1.1 (14 Jan 2015) + + 14 Jan 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +bcftools-1.1.ebuild, +metadata.xml: + sci-biology/bcftools: new package: compiles against bundled sci- + libs/htslib-1.1 but does not install it diff --git a/sci-biology/bcftools/bcftools-1.1.ebuild b/sci-biology/bcftools/bcftools-1.1.ebuild new file mode 100644 index 0000000..e3f446f --- /dev/null +++ b/sci-biology/bcftools/bcftools-1.1.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" +HOMEPAGE="http://www.htslib.org/bcftools_release_notes"; +SRC_URI="http://sourceforge.net/projects/samtools/files/samtools/1.1/bcftools-1.1.tar.bz2"; + +LICENSE="MIT-GRL" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="sci-libs/htslib + dev-lang/perl" +RDEPEND="${DEPEND}" + +src_prepare(){ + sed -e 's#prefix = /usr/local#prefix = /usr#' \ + -e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i Makefile + + sed -e 's#prefix = /usr/local#prefix = /usr#' \ + -e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i htslib-1.1/Makefile +} diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/bcftools/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
