commit: 5f89fde86285ba2b98d3b026165554b4c0d5d9f2 Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Thu Jan 25 11:28:46 2024 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Thu Jan 25 11:28:46 2024 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5f89fde8
dev-python/hdmf-zarr: new package, add 0.5.0 Signed-off-by: Horea Christian <chr <AT> chymera.eu> .../hdmf-zarr/files/hdmf-zarr-0.5.0-coverage.patch | 28 +++++++++++++++++++ dev-python/hdmf-zarr/hdmf-zarr-0.5.0.ebuild | 32 ++++++++++++++++++++++ dev-python/hdmf-zarr/metadata.xml | 16 +++++++++++ 3 files changed, 76 insertions(+) diff --git a/dev-python/hdmf-zarr/files/hdmf-zarr-0.5.0-coverage.patch b/dev-python/hdmf-zarr/files/hdmf-zarr-0.5.0-coverage.patch new file mode 100644 index 000000000..d82c30960 --- /dev/null +++ b/dev-python/hdmf-zarr/files/hdmf-zarr-0.5.0-coverage.patch @@ -0,0 +1,28 @@ +diff --git a/pyproject.toml b/pyproject.toml +index 4008b3b..40e281a 100644 +--- a/pyproject.toml ++++ b/pyproject.toml +@@ -62,9 +62,6 @@ exclude = [".git_archival.txt"] + [tool.hatch.build.targets.wheel] + packages = ["src/hdmf_zarr"] + +-[tool.pytest.ini_options] +-addopts = "--cov --cov-report html" +- + [tool.codespell] + skip = "htmlcov,.git,.mypy_cache,.pytest_cache,.coverage,*.pdf,*.svg,venvs,.tox,./docs/_build/*,*.ipynb" + ignore-words-list = "datas" +diff --git a/tox.ini b/tox.ini +index 720a97f..66d0df3 100644 +--- a/tox.ini ++++ b/tox.ini +@@ -28,8 +28,7 @@ commands = + [testenv:localcoverage] + basepython = python3.11 + commands = +- pytest --cov=hdmf_zarr +- coverage html -d tests/coverage/htmlcov ++ pytest + + # Test with python 3.11; pinned dev and optional reqs + [testenv:py311-optional] diff --git a/dev-python/hdmf-zarr/hdmf-zarr-0.5.0.ebuild b/dev-python/hdmf-zarr/hdmf-zarr-0.5.0.ebuild new file mode 100644 index 000000000..692197867 --- /dev/null +++ b/dev-python/hdmf-zarr/hdmf-zarr-0.5.0.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 +PYTHON_COMPAT=( python3_{10..11} ) +DISTUTILS_USE_PEP517=hatchling + +inherit distutils-r1 pypi + +DESCRIPTION="Zarr I/O backend for HDMF" +HOMEPAGE="https://github.com/hdmf-dev/hdmf-zarr" +#SRC_URI="https://github.com/hdmf-dev/hdmf-zarr/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz" +KEYWORDS="~amd64 ~x86" + +LICENSE="BSD" +SLOT="0" + +RDEPEND=" + dev-python/hdmf[${PYTHON_USEDEP}] + dev-python/numcodecs[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pynwb[${PYTHON_USEDEP}] + dev-python/threadpoolctl[${PYTHON_USEDEP}] + dev-python/zarr[${PYTHON_USEDEP}] +" +DEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}/${P}-coverage.patch" +) + +distutils_enable_tests pytest diff --git a/dev-python/hdmf-zarr/metadata.xml b/dev-python/hdmf-zarr/metadata.xml new file mode 100644 index 000000000..1ced471a1 --- /dev/null +++ b/dev-python/hdmf-zarr/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>gen...@chymera.eu</email> + <name>Horea Christian</name> + </maintainer> + <maintainer type="project"> + <email>s...@gentoo.org</email> + <name>Gentoo Science Project</name> + </maintainer> + <upstream> + <remote-id type="github">hdmf-dev/hdmf-zarr</remote-id> + <remote-id type="pypi">hdmf-zarr</remote-id> + </upstream> +</pkgmetadata>