commit: 13d8f37a154f23e4aa1991851eabaec11143ba6e Author: Michał Górny <mgorny <AT> gentoo <DOT> org> AuthorDate: Fri Jul 5 19:04:04 2024 +0000 Commit: Michał Górny <mgorny <AT> gentoo <DOT> org> CommitDate: Fri Jul 5 19:04:04 2024 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=13d8f37a
dev-python/scipy: Backport a test fix to 1.13.1 Closes: https://bugs.gentoo.org/935383 Signed-off-by: Michał Górny <mgorny <AT> gentoo.org> dev-python/scipy/files/scipy-1.13.1-test.patch | 46 ++++++++++++++++++++++++++ dev-python/scipy/scipy-1.13.1.ebuild | 5 +++ 2 files changed, 51 insertions(+) diff --git a/dev-python/scipy/files/scipy-1.13.1-test.patch b/dev-python/scipy/files/scipy-1.13.1-test.patch new file mode 100644 index 000000000000..e10e8551b757 --- /dev/null +++ b/dev-python/scipy/files/scipy-1.13.1-test.patch @@ -0,0 +1,46 @@ +From 2f930ed7d579837423cf58f30d25d4922e4cef7c Mon Sep 17 00:00:00 2001 +From: Evgeni Burovski <evgeny.burovs...@gmail.com> +Date: Thu, 6 Jun 2024 10:01:58 +0300 +Subject: [PATCH] TST: linalg: bump tolerance in TestEig::test_singular + +Some assertions have atol/rtol configurable, and one assertion had them +hardcoded, and that was causing tolerance problems in a Debian build with +reference LAPACK. + +closes https://github.com/scipy/scipy/issues/20911 +--- + scipy/linalg/tests/test_decomp.py | 7 ++++--- + 1 file changed, 4 insertions(+), 3 deletions(-) + +diff --git a/scipy/linalg/tests/test_decomp.py b/scipy/linalg/tests/test_decomp.py +index 5e171965a4bd..2c4033360d16 100644 +--- a/scipy/linalg/tests/test_decomp.py ++++ b/scipy/linalg/tests/test_decomp.py +@@ -181,7 +181,8 @@ def test_gh_3054(self): + assert_equal(w, np.inf) + assert_allclose(vr, 1) + +- def _check_gen_eig(self, A, B, atol_homog=1e-13, rtol_homog=1e-13): ++ def _check_gen_eig(self, A, B, atol_homog=1e-13, rtol_homog=1e-13, ++ atol=1e-13, rtol=1e-13): + if B is not None: + A, B = asarray(A), asarray(B) + B0 = B +@@ -230,7 +231,7 @@ def _check_gen_eig(self, A, B, atol_homog=1e-13, rtol_homog=1e-13): + for i in range(res.shape[1]): + if np.all(isfinite(res[:, i])): + assert_allclose(res[:, i], 0, +- rtol=1e-13, atol=1e-13, err_msg=msg) ++ rtol=rtol, atol=atol, err_msg=msg) + + # try to consistently order eigenvalues, including complex conjugate pairs + w_fin = w[isfinite(w)] +@@ -269,7 +270,7 @@ def test_singular(self): + [24, 35, 18, 21, 22]]) + + with np.errstate(all='ignore'): +- self._check_gen_eig(A, B, atol_homog=5e-13) ++ self._check_gen_eig(A, B, atol_homog=5e-13, atol=5e-13) + + def test_falker(self): + # Test matrices giving some Nan generalized eigenvalues. diff --git a/dev-python/scipy/scipy-1.13.1.ebuild b/dev-python/scipy/scipy-1.13.1.ebuild index 6858c42f2bcd..46e6f4a7ea8a 100644 --- a/dev-python/scipy/scipy-1.13.1.ebuild +++ b/dev-python/scipy/scipy-1.13.1.ebuild @@ -78,6 +78,11 @@ BDEPEND=" EPYTEST_XDIST=1 distutils_enable_tests pytest +PATCHES=( + # https://github.com/scipy/scipy/pull/20914 + "${FILESDIR}/${P}-test.patch" +) + src_unpack() { default
