commit: 3ff91e0e7be1cf2b9dbdbd864dcfc6e7f95ecdb6
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Jul 10 12:35:59 2024 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Jul 10 12:45:29 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3ff91e0e
dev-python/xarray: Fix testing against dev-python/netcdf4
Add the optional test dep on dev-python/netcdf4, with appropriate USE
flags. Deselect tests that are failing.
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/xarray/xarray-2024.6.0-r1.ebuild | 108 ++++++++++++++++++++++++++++
1 file changed, 108 insertions(+)
diff --git a/dev-python/xarray/xarray-2024.6.0-r1.ebuild
b/dev-python/xarray/xarray-2024.6.0-r1.ebuild
new file mode 100644
index 000000000000..78b8d5d2f3e6
--- /dev/null
+++ b/dev-python/xarray/xarray-2024.6.0-r1.ebuild
@@ -0,0 +1,108 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 pypi
+
+DESCRIPTION="N-D labeled arrays and datasets in Python"
+HOMEPAGE="
+ https://xarray.pydata.org/
+ https://github.com/pydata/xarray/
+ https://pypi.org/project/xarray/
+"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+IUSE="big-endian"
+
+RDEPEND="
+ >=dev-python/numpy-1.23[${PYTHON_USEDEP}]
+ >=dev-python/pandas-2.0[${PYTHON_USEDEP}]
+ >=dev-python/packaging-23.1[${PYTHON_USEDEP}]
+"
+# note: most of the test dependencies are optional
+BDEPEND="
+ dev-python/setuptools-scm[${PYTHON_USEDEP}]
+ test? (
+ dev-python/bottleneck[${PYTHON_USEDEP}]
+ dev-python/cftime[${PYTHON_USEDEP}]
+ dev-python/hypothesis[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/netcdf4[bzip2,szip,${PYTHON_USEDEP}]
+ dev-python/toolz[${PYTHON_USEDEP}]
+ !hppa? ( >=dev-python/scipy-1.4[${PYTHON_USEDEP}] )
+ )
+"
+
+EPYTEST_XDIST=1
+distutils_enable_tests pytest
+
+python_test() {
+ local EPYTEST_DESELECT=(
+ # TODO: these fail with filter errors even if netcdf4 is built
+ # with blosc/zstd support
+
'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[zstd]'
+
'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_lz]'
+
'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_lz4]'
+
'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_lz4hc]'
+
'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_zlib]'
+
'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_zstd]'
+ )
+
+ if ! has_version ">=dev-python/scipy-1.4[${PYTHON_USEDEP}]" ; then
+ EPYTEST_DESELECT+=(
+
'xarray/tests/test_missing.py::test_interpolate_na_2d[coords1]'
+ )
+
+ if ! has_version "dev-python/scipy[${PYTHON_USEDEP}]" ; then
+ EPYTEST_DESELECT+=(
+
xarray/tests/test_calendar_ops.py::test_interp_calendar
+ )
+ fi
+ fi
+
+ if use big-endian ; then
+ EPYTEST_DESELECT+=(
+ # Appears to be a numpy issue in display? See bug
#916460.
+
'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145224193-ns-int64-20-True]'
+
'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1970-09-21T00:12:44.145224808-ns-float64-1e+30-True]'
+
'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145225216-ns-float64--9.223372036854776e+18-True]'
+
'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145224193-ns-int64-None-False]'
+
'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145225-us-int64-None-False]'
+
'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1970-01-01T00:00:01.000001-us-int64-None-False]'
+
'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:21:52.901038080-ns-float32-20.0-True]'
+ )
+ fi
+
+ if [[ ${ABI} != *64* ]]; then
+ EPYTEST_DESELECT+=(
+ # these tests hardcode object sizes for 64-bit arches
+ # https://github.com/pydata/xarray/issues/9127
+
xarray/tests/test_dataarray.py::TestDataArray::test_repr_multiindex
+
xarray/tests/test_dataarray.py::TestDataArray::test_repr_multiindex_long
+
xarray/tests/test_dataset.py::TestDataset::test_repr_multiindex
+
xarray/tests/test_formatting.py::test_array_repr_dtypes_unix
+ )
+ fi
+
+ if has_version ">=dev-python/numpy-2[${PYTHON_USEDEP}]"; then
+ EPYTEST_DESELECT+=(
+
xarray/tests/test_dataset.py::TestDataset::test_polyfit_warnings
+ # https://github.com/pandas-dev/pandas/issues/56996
+
xarray/tests/test_backends.py::test_use_cftime_false_standard_calendar_in_range
+ # TODO
+
'xarray/tests/test_dtypes.py::test_maybe_promote[q-expected19]'
+
'xarray/tests/test_dtypes.py::test_maybe_promote[Q-expected20]'
+
'xarray/tests/test_conventions.py::TestCFEncodedDataStore::test_roundtrip_mask_and_scale[dtype0-create_unsigned_masked_scaled_data-create_encoded_unsigned_masked_scaled_data]'
+
'xarray/tests/test_conventions.py::TestCFEncodedDataStore::test_roundtrip_mask_and_scale[dtype1-create_unsigned_masked_scaled_data-create_encoded_unsigned_masked_scaled_data]'
+ )
+ fi
+
+ local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+ epytest
+}
