commit: 98a47e6245026da91950516c707131481cfdb80d Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org> AuthorDate: Fri Jul 19 11:32:32 2024 +0000 Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org> CommitDate: Fri Jul 19 11:34:42 2024 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=98a47e62
sci-chemistry/aqua: treeclean Bug: https://bugs.gentoo.org/928068 Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org> profiles/package.mask | 1 - sci-chemistry/aqua/Manifest | 2 - sci-chemistry/aqua/aqua-3.2-r3.ebuild | 97 --------------------------- sci-chemistry/aqua/files/aqua-3.2-flags.patch | 84 ----------------------- sci-chemistry/aqua/metadata.xml | 8 --- 5 files changed, 192 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 0d30b2f1a714..609909201453 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -284,7 +284,6 @@ sci-astronomy/predict # fetch restricted, and the file you download from upstream # doesn't match size and manifests. aqua depends on procheck. # Removal on 2024-07-14. Bugs #928067, #928068. -sci-chemistry/aqua sci-chemistry/procheck # Viorel Munteanu <cea...@gentoo.org> (2024-06-11) diff --git a/sci-chemistry/aqua/Manifest b/sci-chemistry/aqua/Manifest deleted file mode 100644 index a6e19c27dff6..000000000000 --- a/sci-chemistry/aqua/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST aqua-3.2-nmr_manual.tar.gz 632031 BLAKE2B 1f595a111af4b5e91fc059b5af590a6c37a44654fcae42e6003b40cf7fdf542cb772d3ef25bf2475455ce8638cd0aebcbbc8c66bb57688ce919af2eac9b535cb SHA512 9b125b03507afebf15301c893efffae9be4e9695b9c577e5c2a80e83b620d04b4c27e867adf06336afa1556eddc96aa97de936028e503b1e85e156542664da0f -DIST aqua3.2.tar.gz 688408 BLAKE2B 898e0e3bbc4ff7b6ce8a8128ce6ffef45db607c74e2d78a70cefc26818d39049e4d18159b65250a3651112f64318ccce838037e563d3a985be7ef369d89b594e SHA512 1939f662a68122da613368aa106d7a31525903014420035eba9d10c3bd99b04d654d156328d308673003854233a02c1da48c036f3187fa1f0f303cc5928edd6a diff --git a/sci-chemistry/aqua/aqua-3.2-r3.ebuild b/sci-chemistry/aqua/aqua-3.2-r3.ebuild deleted file mode 100644 index 78d987ec1460..000000000000 --- a/sci-chemistry/aqua/aqua-3.2-r3.ebuild +++ /dev/null @@ -1,97 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit fortran-2 toolchain-funcs - -DESCRIPTION="Program suite in this distribution calculates restraint violations" -HOMEPAGE="http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html"; -SRC_URI=" - ${PN}${PV}.tar.gz - doc? ( ${P}-nmr_manual.tar.gz )" - -SLOT="0" -LICENSE="procheck" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples" - -RDEPEND="sci-chemistry/procheck" -DEPEND="app-shells/tcsh" - -RESTRICT="fetch" - -S="${WORKDIR}"/${PN}${PV} - -PATCHES=( - "${FILESDIR}"/${P}-flags.patch -) - -pkg_nofetch() { - elog "Please visit http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/download.html"; - elog "And follow the instructions for downloading the following into your DISTDIR" - elog "directory:" - elog " ${PN}${PV}.tar.gz" - if use doc; then - elog " nmr_manual.tar.gz -> ${P}-nmr_manual.tar.gz" - fi -} - -src_prepare() { - sed \ - -e 's:nawk:gawk:g' \ - -e "s:/bin/gawk:${EPREFIX}/usr/bin/gawk:g" \ - -e "s:/usr/local/bin/perl:${EPREFIX}/usr/bin/perl:g" \ - -i $(find . -type f) || die - default -} - -src_compile() { - cd src || die - emake \ - MYROOT="${WORKDIR}" \ - CC="$(tc-getCC)" \ - FC="$(tc-getFC)" \ - CFLAGS="${CFLAGS} -I../sub/lib" \ - FFLAGS="${FFLAGS}" \ - LDFLAGS="${LDFLAGS}" \ - exth - emake \ - MYROOT="${WORKDIR}" \ - CC="$(tc-getCC)" \ - FC="$(tc-getFC)" \ - CFLAGS="${CFLAGS} -I../sub/lib" \ - FFLAGS="${FFLAGS}" \ - LDFLAGS="${LDFLAGS}" -} - -src_install() { - rm -f scripts/conv* || die - dobin bin/* scripts/* - dosym AquaWhat /usr/bin/qwhat - dosym AquaHow /usr/bin/qhow - dosym AquaPseudo /usr/bin/qpseudo - dosym AquaDist /usr/bin/qdist - dosym AquaCalc /usr/bin/qcalc - dosym AquaAssign /usr/bin/qassign - dosym AquaRedun /usr/bin/qredun - dosym AquaCompl /usr/bin/qcompl - - dodoc HISTORY HOW_TO_USE NEW README doc/* - dohtml html/* - - insinto /usr/share/${PN} - doins data/* - if use examples; then - doins -r exmpls - fi - - if use doc; then - dohtml -r manual - fi - - cat >> "${T}"/34aqua <<- EOF - AQUADATADIR="${EPREFIX}/usr/share/${PN}" - EOF - doenvd "${T}"/34aqua -} diff --git a/sci-chemistry/aqua/files/aqua-3.2-flags.patch b/sci-chemistry/aqua/files/aqua-3.2-flags.patch deleted file mode 100644 index a60841b8ce08..000000000000 --- a/sci-chemistry/aqua/files/aqua-3.2-flags.patch +++ /dev/null @@ -1,84 +0,0 @@ -diff --git a/src/makefile b/src/makefile -index 3113471..dd7a320 100644 ---- a/src/makefile -+++ b/src/makefile -@@ -176,47 +176,46 @@ nrutil.h: - # Executable files - - $(BIN)/AquaWhat: AquaWhat.o $(OBJECTS) $(R_OBJECTS) $(RNG_OBJECTS) -- $(CC) -o $(BIN)/AquaWhat AquaWhat.o $(OBJECTS) $(R_OBJECTS) $(RNG_OBJECTS) $(LDFLAGS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaWhat AquaWhat.o $(OBJECTS) $(R_OBJECTS) $(RNG_OBJECTS) - - $(BIN)/AquaHow: AquaHow.o $(OBJECTS) $(R_OBJECTS) AquaFuncts_dr.o $(RNG_OBJECTS) -- $(CC) -o $(BIN)/AquaHow AquaHow.o $(OBJECTS) $(R_OBJECTS) AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaHow AquaHow.o $(OBJECTS) $(R_OBJECTS) AquaFuncts_dr.o $(RNG_OBJECTS) - - $(BIN)/AquaPseudo: AquaPseudo.o $(OBJECTS) $(R_OBJECTS) -- $(CC) -o $(BIN)/AquaPseudo AquaPseudo.o $(OBJECTS) $(R_OBJECTS) $(LDFLAGS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaPseudo AquaPseudo.o $(OBJECTS) $(R_OBJECTS) - - $(BIN)/AquaDist: AquaDist.o $(OBJECTS) -- $(CC) -o $(BIN)/AquaDist AquaDist.o $(OBJECTS) $(LDFLAGS) -lm -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaDist AquaDist.o $(OBJECTS) -lm - - $(BIN)/AquaCalc: AquaCalc.o $(OBJECTS) $(RNG_OBJECTS) -- $(CC) -o $(BIN)/AquaCalc AquaCalc.o $(OBJECTS) $(RNG_OBJECTS) $(LDFLAGS) -lm -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaCalc AquaCalc.o $(OBJECTS) $(RNG_OBJECTS) -lm - - $(BIN)/AquaAssign: AquaAssign.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) -- $(CC) -o $(BIN)/AquaAssign AquaAssign.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaAssign AquaAssign.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) - - $(BIN)/AquaCompl: AquaCompl.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) -- $(CC) -o $(BIN)/AquaCompl AquaCompl.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS) -lm -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaCompl AquaCompl.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) -lm - - $(BIN)/AquaRedun: AquaRedun.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) -- $(CC) -o $(BIN)/AquaRedun AquaRedun.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaRedun AquaRedun.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) - - $(BIN)/testnew: testnew.o $(OBJECTS) -- $(CC) -o $(BIN)/testnew testnew.o $(OBJECTS) $(LDFLAGS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/testnew testnew.o $(OBJECTS) - - $(BIN)/getproj: getproj.c -- $(CC) -o $(BIN)/getproj -O getproj.c -+ $(CC) $(CFLAGS) $(LDFLAGS) -o $(BIN)/getproj getproj.c - - $(BIN)/AquaPlot: AquaPlot.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o -- $(CC) -o $(BIN)/AquaPlot AquaPlot.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o $(LDFLAGS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaPlot AquaPlot.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o - - $(BIN)/Qext: Qext.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o -- $(CC) -o $(BIN)/Qext Qext.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o $(LDFLAGS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/Qext Qext.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o - - $(BIN)/StarTest: StarTest.o -- $(CC) -o $(BIN)/StarTest StarTest.o $(LDFLAGS) $(STARFLAGS) $(STARLIBS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/StarTest StarTest.o $(STARFLAGS) $(STARLIBS) - - exth: exth.f -- f77 -o exth -O2 exth.f -- strip exth -+ $(FC) $(FFLAGS) $(LDFLAGS) -o exth -O2 exth.f - - - # Object files -@@ -269,7 +268,7 @@ AquaCommon.o: AquaCommon.c AquaCommon.h nrutil.h \ - $(CC) -c AquaCommon.c $(CFLAGS) - - nrutil.o: nrutil.c nrutil.h -- $(CC) -c nrutil.c -DANSI -+ $(CC) $(CFLAGS) -c nrutil.c -DANSI - - AquaFuncts.o: AquaFuncts.c AquaFuncts.h AquaFuncts_cv.h AquaFuncts_io.h\ - AquaStrucset.h AquaFiles.h\ -@@ -319,7 +318,7 @@ $(LIB)/MenuFuncts.o: $(LIB)/MenuFuncts.c $(LIB)/MenuTypes.h $(LIB)/MenuFuncts.h\ - cd $(LIB); $(CC) -c MenuFuncts.c $(CFLAGS) - - cv_subs.o: cv_subs.f -- f77 -c cv_subs.f $(FFLAGS) -+ $(FC) -c cv_subs.f $(FFLAGS) - - Qext.o: Qext.c Qext.h\ - $(LIB)/MenuFuncts.h $(LIB)/Functs.h $(G_HEADERS) diff --git a/sci-chemistry/aqua/metadata.xml b/sci-chemistry/aqua/metadata.xml deleted file mode 100644 index d4ff1000a775..000000000000 --- a/sci-chemistry/aqua/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemis...@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata>
