commit: 727c14502c0538299f148865d6a39c053fb56da1 Author: Michael Schubert <mschu.dev <AT> gmail <DOT> com> AuthorDate: Tue Jul 16 12:13:03 2024 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Fri Jul 19 12:35:03 2024 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=727c1450
dev-python/pyfaidx: version bump 0.8.1.1 Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> {sci-biology => dev-python}/pyfaidx/metadata.xml | 4 ---- dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild | 25 ++++++++++++++++++++++++ profiles/updates/2Q-2024 | 1 + sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild | 22 --------------------- sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild | 24 ----------------------- 5 files changed, 26 insertions(+), 50 deletions(-) diff --git a/sci-biology/pyfaidx/metadata.xml b/dev-python/pyfaidx/metadata.xml similarity index 75% rename from sci-biology/pyfaidx/metadata.xml rename to dev-python/pyfaidx/metadata.xml index 47cc39d79..b0e39cc41 100644 --- a/sci-biology/pyfaidx/metadata.xml +++ b/dev-python/pyfaidx/metadata.xml @@ -5,10 +5,6 @@ <email>mschu....@gmail.com</email> <name>Michael Schubert</name> </maintainer> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> <upstream> <remote-id type="pypi">pyfaidx</remote-id> <remote-id type="github">mdshw5/pyfaidx</remote-id> diff --git a/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild b/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild new file mode 100644 index 000000000..86465aecd --- /dev/null +++ b/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..12} ) + +inherit distutils-r1 pypi + +DESCRIPTION="Efficient pythonic random access to fasta subsequences" +HOMEPAGE="https://github.com/mdshw5/pyfaidx" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +REPEND="dev-python/importlib_metadata[${PYTHON_USEDEP}]" + +EPYTEST_DESELECT=( + # needs external file + tests/test_Fasta_bgzip.py +) + +distutils_enable_tests pytest diff --git a/profiles/updates/2Q-2024 b/profiles/updates/2Q-2024 new file mode 100644 index 000000000..bf7fb5174 --- /dev/null +++ b/profiles/updates/2Q-2024 @@ -0,0 +1 @@ +move sci-biology/pyfaidx dev-python/pyfaidx diff --git a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild deleted file mode 100644 index bec223f6c..000000000 --- a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild +++ /dev/null @@ -1,22 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) -DISTUTILS_USE_SETUPTOOLS=rdepend - -inherit distutils-r1 - -DESCRIPTION="Efficient pythonic random access to fasta subsequences" -HOMEPAGE="https://pypi.python.org/pypi/pyfaidx https://github.com/mdshw5/pyfaidx" -SRC_URI="https://github.com/mdshw5/pyfaidx/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -REPEND="dev-python/six[${PYTHON_USEDEP}]" - -#distutils_enable_tests nose diff --git a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild b/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild deleted file mode 100644 index 14f557869..000000000 --- a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild +++ /dev/null @@ -1,24 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) -DISTUTILS_USE_PEP517=setuptools - -inherit distutils-r1 pypi - -DESCRIPTION="Efficient pythonic random access to fasta subsequences" -HOMEPAGE="https://pypi.python.org/pypi/pyfaidx https://github.com/mdshw5/pyfaidx" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" -# Test issues reported upstream: -# https://github.com/mdshw5/pyfaidx/issues/208 -RESTRICT="test" - -REPEND="dev-python/six[${PYTHON_USEDEP}]" - -distutils_enable_tests pytest