commit: 5fd2d15989cb1eb99579c0679c16772620be122f Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Feb 24 22:37:13 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Feb 24 22:37:13 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5fd2d159
version bump; still missing src_compile() logic Package-Manager: portage-2.2.15 --- sci-biology/fastqc/ChangeLog | 8 +++++++- sci-biology/fastqc/{fastqc-0.10.1.ebuild => fastqc-0.11.2.ebuild} | 7 ++++--- 2 files changed, 11 insertions(+), 4 deletions(-) diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog index 42bae79..6b6cbf5 100644 --- a/sci-biology/fastqc/ChangeLog +++ b/sci-biology/fastqc/ChangeLog @@ -1,7 +1,13 @@ # ChangeLog for sci-biology/fastqc -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*fastqc-0.11.2 (24 Feb 2015) + + 24 Feb 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +fastqc-0.11.2.ebuild, -fastqc-0.10.1.ebuild: + version bump; still missing src_compile() logic + 16 Sep 2014; Christoph Junghans <ott...@gentoo.org> fastqc-0.10.1.ebuild: clean up diff --git a/sci-biology/fastqc/fastqc-0.10.1.ebuild b/sci-biology/fastqc/fastqc-0.11.2.ebuild similarity index 85% rename from sci-biology/fastqc/fastqc-0.10.1.ebuild rename to sci-biology/fastqc/fastqc-0.11.2.ebuild index 3e2b639..b608266 100644 --- a/sci-biology/fastqc/fastqc-0.10.1.ebuild +++ b/sci-biology/fastqc/fastqc-0.11.2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -16,13 +16,14 @@ KEYWORDS="" IUSE="" DEPEND="sci-biology/picard - >=virtual/jrei-1.6" + >=virtual/jre-1.5" RDEPEND="${DEPEND}" S="${WORKDIR}"/FastQC src_install(){ - dobin fastqc + dobin fastqc run_fastqc.bat + dodoc README.txt RELEASE_NOTES.txt # TODO: need to compile java in uk/ac/babraham/FastQC/ # and decide whether jbzip2-0.9.jar is a standard java lib or not