After a system update on December 13, 2015, I have found out
that gnome-disks command does not start any more. When trying,
it reports the following:
$ gnome-disks
(gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
(gnome-disks:4828): GLib-GObject-CRITICAL **:
g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
(instance)' failed
(gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
(gnome-disks:4828): GLib-GObject-CRITICAL **:
g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
(instance)' failed
(gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
(gnome-disks:4828): GLib-GObject-CRITICAL **:
g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
(instance)' failed
(gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
(gnome-disks:4828): GLib-GObject-CRITICAL **:
g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
(instance)' failed
(gnome-disks:4828): GLib-GObject-WARNING **: invalid (NULL) pointer instance
(gnome-disks:4828): GLib-GObject-CRITICAL **:
g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE
(instance)' failed
(gnome-disks:4828): GLib-GObject-CRITICAL **: g_object_unref:
assertion 'G_IS_OBJECT (object)' failed
(gnome-disks:4828): GNOME-Disks-ERROR **: Error getting udisks client:
Could not connect: No such file or directory
Trace/breakpoint trap
Recompiling of gnome-disk-utility does not help anyway.
The package compiles almost nomarly but somewhere in the middle reports:
gducreatediskimagedialog.c:498:7: warning:
'gtk_dialog_get_action_area' is deprecated (declared at
/usr/include/gtk-3.0/gtk/gtkdialog.h:205) [-Wdeprecated-declarations]
gtk_button_box_set_child_secondary (GTK_BUTTON_BOX
(gtk_dialog_get_action_area (GTK_DIALOG (dialog))),
^
gducreatediskimagedialog.c: In function 'check_overwrite':
gducreatediskimagedialog.c:933:3: warning:
'gtk_dialog_set_alternative_button_order' is deprecated (declared at
/usr/include/gtk-3.0/gtk/gtkdialog.h:187) [-Wdeprecated-declarations]
gtk_dialog_set_alternative_button_order (GTK_DIALOG (dialog),
^
gdupasswordstrengthwidget.c: In function
'gdu_password_strength_widget_constructed':
gdupasswordstrengthwidget.c:205:7: warning: 'gtk_misc_set_alignment'
is deprecated (declared at
/usr/include/gtk-3.0/gtk/deprecated/gtkmisc.h:72)
[-Wdeprecated-declarations]
gtk_misc_set_alignment (GTK_MISC (label), 0, 0.5);
^
gdupasswordstrengthwidget.c:205:7: warning: 'gtk_misc_get_type' is
deprecated (declared at
/usr/include/gtk-3.0/gtk/deprecated/gtkmisc.h:70)
[-Wdeprecated-declarations]
Moreover, I cannot print any more. (Have not checked it more than once, though.)
Any ideas, except that I should not update the system on December 13?
I use xfce4 but still on the default/linux/amd64/13.0/desktop/gnome profile.
The output of the system update on that day was as following:
# emerge --update --deep --with-bdeps=y --newuse --backtrack=90 --ask world
These are the packages that would be merged, in order:
Calculating dependencies... done!
[ebuild R ] dev-lang/python-exec-2.0.1-r1 PYTHON_TARGETS="(-jython2_5%*)"
[ebuild U ] sys-apps/busybox-1.24.1 [1.23.1-r1]
[ebuild U ] x11-proto/xproto-7.0.28 [7.0.27]
[ebuild U ] x11-libs/libdrm-2.4.65 [2.4.59] USE="-valgrind%"
VIDEO_CARDS="-amdgpu%"
[ebuild U ] x11-proto/kbproto-1.0.7 [1.0.6-r1]
[ebuild U ] x11-proto/randrproto-1.5.0 [1.4.0-r1]
[ebuild U ] media-fonts/font-util-1.3.1 [1.3.0]
[ebuild U ] x11-libs/libpciaccess-0.13.4 [0.13.3]
[ebuild U ] x11-libs/libXdmcp-1.1.2 [1.1.1-r1]
[ebuild U ] x11-libs/libfontenc-1.1.3 [1.1.2]
[ebuild U ] x11-base/xorg-drivers-1.17 [1.16]
VIDEO_CARDS="-amdgpu% (-tegra)"
[ebuild N ] app-misc/c_rehash-1.7-r1
[ebuild U ] dev-libs/openssl-1.0.2e [1.0.2d]
[blocks b ] <dev-libs/openssl-1.0.2d-r1:0
("<dev-libs/openssl-1.0.2d-r1:0" is blocking app-misc/c_rehash-1.7-r1)
[ebuild U ] dev-perl/Net-SMTP-SSL-1.30.0 [1.10.0-r1] USE="{-test%}"
[ebuild U ] dev-libs/libevdev-1.4.4 [1.3]
[ebuild NS ] dev-python/beautifulsoup-4.3.2 [3.2.1-r1] USE="-doc
{-test}" PYTHON_TARGETS="python2_7 python3_4 (-pypy) (-pypy3)
-python3_3"
[ebuild r U ] x11-libs/libxcb-1.11.1 [1.11-r1]
[ebuild U ] x11-libs/libX11-1.6.3 [1.6.2]
[ebuild rR ] x11-libs/xcb-util-renderutil-0.3.9-r1
[ebuild rR ] x11-libs/xcb-util-wm-0.4.1-r1
[ebuild rR ] x11-libs/xcb-util-keysyms-0.4.0
[ebuild U ] x11-libs/libXrender-0.9.9 [0.9.8]
[ebuild U ] x11-libs/libxkbfile-1.0.9 [1.0.8]
[ebuild U ] x11-libs/libXi-1.7.5 [1.7.4]
[ebuild U ] x11-libs/libXrandr-1.5.0 [1.4.2]
[ebuild U ] x11-misc/xkeyboard-config-2.16 [2.14]
[ebuild U ] x11-apps/setxkbmap-1.3.1 [1.3.0]
[ebuild U ] dev-python/certifi-2015.11.20 [2015.9.6.2]
[ebuild N ] dev-python/html5lib-0.9999999 USE="{-test}"
PYTHON_TARGETS="python2_7 python3_4 (-pypy) (-pypy3) -python3_3
(-python3_5)"
[ebuild rR ] x11-libs/xcb-util-0.4.0
[ebuild rR ] x11-libs/xcb-util-image-0.4.0
[ebuild U ] x11-libs/xcb-util-cursor-0.1.2 [0.1.1-r1]
[ebuild U ] dev-libs/libinput-1.1.0 [1.0.1]
[ebuild U ] x11-libs/libXt-1.1.5 [1.1.4]
[ebuild U ] x11-libs/libXaw-1.0.13 [1.0.12]
[ebuild R ] app-text/xmlto-0.0.26-r1 USE="text%*"
[ebuild U ] x11-apps/xauth-1.0.9-r2 [1.0.9-r1]
[ebuild U ] sys-apps/portage-2.2.24 [2.2.20.1]
PYTHON_TARGETS="(-python3_5)"
[ebuild U ] x11-apps/xinit-1.3.4-r1 [1.3.3-r1] USE="-systemd%"
[ebuild U ] sys-apps/man-pages-4.02 [4.00]
[ebuild U ] app-eselect/eselect-opengl-1.3.1-r4 [1.2.7]
[ebuild U ] x11-proto/glproto-1.4.17-r1 [1.4.17]
[blocks b ] <x11-proto/glproto-1.4.17-r1
("<x11-proto/glproto-1.4.17-r1" is blocking
app-eselect/eselect-opengl-1.3.1-r4)
[ebuild U ] media-libs/mesa-11.0.6 [10.3.7-r1] USE="-d3d9% -vaapi%"
[blocks b ] =media-libs/mesa-10.3.7-r1
("=media-libs/mesa-10.3.7-r1" is blocking
app-eselect/eselect-opengl-1.3.1-r4)
[ebuild U ] media-libs/libepoxy-1.3.1 [1.2]
[ebuild U ] x11-base/xorg-server-1.17.4 [1.16.4] USE="(-libressl) -xephyr%"
[blocks b ] =x11-base/xorg-server-1.16.4
("=x11-base/xorg-server-1.16.4" is blocking
app-eselect/eselect-opengl-1.3.1-r4)
[blocks b ] >=app-eselect/eselect-opengl-1.3.0
(">=app-eselect/eselect-opengl-1.3.0" is blocking
x11-base/xorg-server-1.16.4)
[ebuild rR ] x11-drivers/xf86-video-ati-7.5.0
[ebuild U ] x11-drivers/xf86-input-evdev-2.9.2 [2.9.1]
[ebuild U ] media-libs/freeglut-3.0.0 [2.8.1-r1]
[ebuild U ] dev-java/icedtea-bin-7.2.6.3 [7.2.6.2]
[ebuild U ] sys-apps/openrc-0.18.4 [0.17]
[ebuild U ] www-client/chromium-47.0.2526.80 [46.0.2490.86]
USE="hangouts%* (-gtk3) (-system-ffmpeg) -widevine%"
The following packages are causing rebuilds:
(x11-libs/libxcb-1.11.1:0/1.11.1::gentoo, ebuild scheduled for
merge) causes rebuilds for:
(x11-libs/xcb-util-renderutil-0.3.9-r1:0/0::gentoo, ebuild
scheduled for merge)
(x11-libs/xcb-util-wm-0.4.1-r1:0/0::gentoo, ebuild scheduled for merge)
(x11-libs/xcb-util-image-0.4.0:0/0::gentoo, ebuild scheduled for merge)
(x11-libs/xcb-util-0.4.0:0/0::gentoo, ebuild scheduled for merge)
(x11-libs/xcb-util-keysyms-0.4.0:0/0::gentoo, ebuild scheduled for merge)
(x11-base/xorg-server-1.17.4:0/1.17.4::gentoo, ebuild scheduled for
merge) causes rebuilds for:
(x11-drivers/xf86-video-ati-7.5.0:0/0::gentoo, ebuild scheduled for merge)
Would you like to merge these packages? [Yes/No] y
...
>>> Installing (51 of 51) www-client/chromium-47.0.2526.80::gentoo
* >>> SetUID: [chmod go-r] /usr/lib64/chromium-browser/chrome-sandbox
...
[ ok ]
* Updating icons cache ...
[ ok ]
* Updating desktop mime database ...
* Updating icons cache ...
[ ok ]
* Messages for package sys-apps/busybox-1.24.1:
* Could not locate user configfile, so we will save a default one
* Your configuration for sys-apps/busybox-1.24.1 has been saved in
* /etc/portage/savedconfig/sys-apps/busybox-1.24.1 for your editing pleasure.
* You can edit these files by hand and remerge this package with
* USE=savedconfig to customise the configuration.
* You can rename this file/directory to one of the following for
* its configuration to apply to multiple versions:
* ${PORTAGE_CONFIGROOT}/etc/portage/savedconfig/
* [${CTARGET}|${CHOST}|""]/${CATEGORY}/[${PF}|${P}|${PN}]
* Messages for package x11-libs/libXi-1.7.5:
* Some special keys and keyboard layouts may stop working.
* To fix them, recompile xorg-server.
* Messages for package x11-apps/xinit-1.3.4-r1:
* If you use startx to start X instead of a login manager like gdm/kdm,
* you can set the XSESSION variable to anything in /etc/X11/Sessions/ or
* any executable. When you run startx, it will run this as the login session.
* You can set this in a file in /etc/env.d/ for the entire system,
* or set it per-user in ~/.bash_profile (or similar for other shells).
* Here's an example of setting it for the whole system:
* echo XSESSION="Gnome" > /etc/env.d/90xsession
* env-update && source /etc/profile
* Messages for package x11-proto/glproto-1.4.17-r1:
* This package will overwrite one or more files that may belong to other
* packages (see list below). You can use a command such as `portageq
owners / <filename>` to identify the installed package that owns a
* file. If portageq reports that only one package owns a file then do
* NOT file a bug report. A bug report is only useful if it identifies at
* least two or more packages that are known to install the same file(s).
* If a collision occurs and you can not explain where the file came from
* then you should simply ignore the collision since there is not enough
* information to determine if a real problem exists. Please do NOT file
* a bug report at http://bugs.gentoo.org unless you report exactly which
* two packages install the same file(s). See
* http://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how to
* solve the problem. And once again, please do NOT file a bug report
* unless you have completely understood the above message.
*
* Detected file collision(s):
*
* /usr/include/GL/glxmd.h
* /usr/include/GL/glxtokens.h
* /usr/include/GL/glxproto.h
*
* Searching all installed packages for file collisions...
*
* Press Ctrl-C to Stop
*
* None of the installed packages claim the file(s).
*
* Package 'x11-proto/glproto-1.4.17-r1' merged despite file collisions.
* If necessary, refer to your elog messages for the whole content of the
* above message.
* Messages for package media-libs/mesa-11.0.6:
* This package will overwrite one or more files that may belong to other
* packages (see list below). You can use a command such as `portageq
* owners / <filename>` to identify the installed package that owns a
* file. If portageq reports that only one package owns a file then do
* NOT file a bug report. A bug report is only useful if it identifies at
* least two or more packages that are known to install the same file(s).
* If a collision occurs and you can not explain where the file came from
* then you should simply ignore the collision since there is not enough
* information to determine if a real problem exists. Please do NOT file
* a bug report at http://bugs.gentoo.org unless you report exactly which
* two packages install the same file(s). See
* http://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how to
* solve the problem. And once again, please do NOT file a bug report
* unless you have completely understood the above message.
*
* Detected file collision(s):
*
* /usr/include/GL/gl.h
* /usr/include/GL/glx.h
* /usr/include/GL/glxext.h
* /usr/include/GL/glext.h
* /usr/include/KHR/khrplatform.h
* /usr/include/GLES2/gl2ext.h
* /usr/include/GLES2/gl2platform.h
* /usr/include/GLES2/gl2.h
* /usr/include/EGL/egl.h
* /usr/include/EGL/eglext.h
* /usr/include/EGL/eglplatform.h
* /usr/include/EGL/eglmesaext.h
* /usr/include/EGL/eglextchromium.h
* /usr/include/GLES3/gl3platform.h
* /usr/include/GLES3/gl3ext.h
* /usr/include/GLES3/gl3.h
* /usr/include/GLES3/gl31.h
* /usr/lib32/libGL.so.1
* /usr/lib32/libGL.so
* /usr/lib32/libGLESv2.so.2
* /usr/lib32/libEGL.so.1
* /usr/lib32/libEGL.so
* /usr/lib32/libGLESv2.so
* /usr/lib64/libGL.so.1
* /usr/lib64/libGL.so
* /usr/lib64/libGLESv2.so.2
* /usr/lib64/libEGL.so.1
* /usr/lib64/libEGL.so
* /usr/lib64/libGLESv2.so
*
* Searching all installed packages for file collisions...
*
* Press Ctrl-C to Stop
*
* None of the installed packages claim the file(s).
*
* Package 'media-libs/mesa-11.0.6' merged despite file collisions. If
* necessary, refer to your elog messages for the whole content of the
* above message.
* USE="bindist" was not set. Potentially patent encumbered code was
* enabled. Please see patents.txt for an explanation.
* Messages for package x11-base/xorg-server-1.17.4:
* This package will overwrite one or more files that may belong to other
* packages (see list below). You can use a command such as `portageq
* owners / <filename>` to identify the installed package that owns a
* file. If portageq reports that only one package owns a file then do
* NOT file a bug report. A bug report is only useful if it identifies at
* least two or more packages that are known to install the same file(s).
* If a collision occurs and you can not explain where the file came from
* then you should simply ignore the collision since there is not enough
* information to determine if a real problem exists. Please do NOT file
* a bug report at http://bugs.gentoo.org unless you report exactly which
* two packages install the same file(s). See
* http://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how to
* solve the problem. And once again, please do NOT file a bug report
* unless you have completely understood the above message.
*
* Detected file collision(s):
*
* /usr/lib64/xorg/modules/extensions/libglx.so
*
* Searching all installed packages for file collisions...
*
* Press Ctrl-C to Stop
*
* None of the installed packages claim the file(s).
*
* Package 'x11-base/xorg-server-1.17.4' merged despite file collisions.
* If necessary, refer to your elog messages for the whole content of the
* above message.
* Messages for package sys-apps/openrc-0.18.4:
* /etc/mtab will be replaced with a
* symbolic link to /proc/self/mounts on the next
* reboot.
* Change the setting in /etc/conf.d/mtab
* if you do not want this to happen.
* In this version of OpenRC, the loopback interface no longer
* satisfies the net virtual.
* If you have services now which do not start because of this,
* They can be fixed by adding rc_need="!net"
* to the /etc/conf.d/<servicename> file.
* You should also file a bug against the service asking that
* need net be dropped from the dependencies.
* The bug you file should block the following tracker:
* https://bugs.gentoo.org/show_bug.cgi?id=439092
*
* Bug https://bugs.gentoo.org/show_bug.cgi?id=427996 was not
* fixed correctly in earlier versions of OpenRC.
* The correct fix is implemented in this version, but that
* means netmount needs to be added to the default runlevel if
* you are using nfs file systems.
*
* You should now update all files in /etc, using etc-update
* or equivalent before restarting any services or this host.
>>> Auto-cleaning packages...
>>> No outdated packages were found on your system.
* GNU info directory index is up-to-date.
* IMPORTANT: config file '/etc/rc.conf' needs updating.
* IMPORTANT: 2 config files in '/usr/share/X11/xkb/symbols/' need updating.
* See the CONFIGURATION FILES section of the emerge
* man page to learn how to update config files.
* After world updates, it is important to remove obsolete packages with
* emerge --depclean. Refer to `man emerge` for more information.
# emerge --depclean --backtrack=90 --ask
>>> Nothing to clean.
# revdep-rebuild
>>> Done.
