On 20/11/16 01:47, Zhu Sha Zang wrote: > Hello everybody... > > > A single doubt here: > > > After an upgrade in package dev-libs/icu (from 57.1 to 58.1-r1) i tried > a package upgrade inside R and got that: > > > /> update.packages(checkBuilt=TRUE, ask=FALSE, > repos='http://cran.us.r-project.org') > trying URL 'http://cran.us.r-project.org/src/contrib/knitr_1.15.tar.gz' > Content type 'application/x-gzip' length 1027358 bytes (1003 KB) > ================================================== > downloaded 1003 KB > > * installing *source* package ‘knitr’ ... > ** package ‘knitr’ successfully unpacked and MD5 sums checked > ** R > ** demo > ** inst > ** preparing package for lazy loading > Error in dyn.load(file, DLLpath = DLLpath, ...) : > *unable to load shared object > '/usr/lib64/R/library/stringi/libs/stringi.so':** > ** libicui18n.so.57: cannot open shared object file: No such file or > directory* > Error : unable to load R code in package ‘knitr’ > ERROR: lazy loading failed for package ‘knitr’ > * removing ‘/usr/lib64/R/library/knitr’ > * restoring previous ‘/usr/lib64/R/library/knitr’ > > The downloaded source packages are in > ‘/tmp/RtmpKBphr0/downloaded_packages’ > Updating HTML index of packages in '.Library' > Making 'packages.html' ... done > Warning message: > In install.packages(update[instlib == l, "Package"], l, contriburl = > contriburl, : > installation of package ‘knitr’ had non-zero exit status > / > > > This kind of "bug" can I put inside bugs.gentoo.org or its a cran > package bug? > > It is not the first time and i'm in dout about how to proceed. > > > Thanks anyway. > > Best regards!! > > // >
Due to the dev-libs/icu upgrade, the package that provides /usr/lib64/R/library/stringi/libs/stringi.so needs to be rebuilt. I assume you're using the R overlay, so that would be sci-CRAN/stringi. It's possible for this rebuild to be achieved automatically in the future, but it requires a minor modification to the stringi ebuild (subslot operator to be added to dev-libs/icu dependency). As the R overlay is automatically generated I'm not sure how to achieve this so I've CCed Benda who I hope is the right person to look at this. :-)
