Hi Daniele
Sure, you can download two files here:
https://drive.google.com/drive/folders/1IKz-KVSmGLfCEsh30J4xg0lEB3kLkpM-?usp=sharing
Thanks a lot for your help!
Lennert
From: [email protected] [mailto:[email protected]] On Behalf Of
Daniele Romagnoli
Sent: Friday, July 6, 2018 3:35 PM
To: Lennert Schepers <[email protected]>
Cc: [email protected]
Subject: Re: [Geoserver-users] Netcdf import error - Netcdf supported formats?
Dear Lennert,
do you have any chance to share one of these samples? (eventually, even through
a private email).
If that's not an option, even a small sample dataset with "fake" values
reporting the same problem should be fine for a quick check.
Best Regards,
Daniele
On Thu, Jul 5, 2018 at 5:55 PM, Lennert Schepers <[email protected]>
wrote:
Dear Geoserver Users list
I’m looking for a way to upload our Netcdf files with the Netcdf-plugin to
GeoServer (Version 2.11.5).
The plugin works well with with CF and COARDS sample data from
https://www.unidata.ucar.edu/software/netcdf/examples/files.html
However, when I try to upload our own Netcdf files, I receive an error when
saving the store.
Could not list layers for this store, an error occurred retrieving them: Failed
to create reader from
file:coverages/testLennertS/log.x5.20132013.0103.10001.10001.anl.nc and hints
null
Ncdump:
netcdf log.x5.20132013.0103.10001.10001.anl {
dimensions:
lon = 950 ;
lat = 400 ;
depth = 1 ;
time = 1 ;
nv = 2 ;
variables:
float lon(lon) ;
lon:units = "degrees_east" ;
float lat(lat) ;
lat:units = "degrees_north" ;
float depth(depth) ;
depth:units = "meters" ;
depth:positive = "down" ;
float time(time) ;
time:units = "Days since 2013-01-01" ;
time:climatology = "climatology_bounds" ;
float climatology_bounds(time, nv) ;
float CORRLEN(time, depth) ;
CORRLEN:long_name = "Correlation Length" ;
CORRLEN:units = "degrees_north" ;
float SNR(time, depth) ;
SNR:long_name = "Signal to Noise" ;
float VARBACK(time, depth) ;
VARBACK:long_name = "Background Field Variance" ;
VARBACK:units = "logab^2" ;
float log.x5(time, depth, lat, lon) ;
log.x5:long_name = "log.x5" ;
log.x5:units = "logab" ;
log.x5:valid_min = -0.7f ;
log.x5:valid_max = 5.8f ;
log.x5:_FillValue = -99.f ;
log.x5:cell_methods = "timebins" ;
log.x5:missing_value = -99.f ;
float log.x5_err(time, depth, lat, lon) ;
log.x5_err:long_name = "Error standard deviation of log.x5" ;
log.x5_err:units = "logab" ;
log.x5_err:valid_min = 0.f ;
log.x5_err:valid_max = 0.69f ;
log.x5_err:_FillValue = -99.f ;
log.x5_err:missing_value = -99.f ;
float log.x5_L1(time, depth, lat, lon) ;
log.x5_L1:long_name = "log.x5 masked using relative error
threshold 0.3" ;
log.x5_L1:units = "logab" ;
log.x5_L1:valid_min = -0.4f ;
log.x5_L1:valid_max = 5.8f ;
log.x5_L1:_FillValue = -99.f ;
log.x5_L1:missing_value = -99.f ;
float log.x5_L2(time, depth, lat, lon) ;
log.x5_L2:long_name = "log.x5 masked using relative error
threshold 0.5" ;
log.x5_L2:units = "logab" ;
log.x5_L2:valid_min = -0.4f ;
log.x5_L2:valid_max = 5.8f ;
log.x5_L2:_FillValue = -99.f ;
log.x5_L2:missing_value = -99.f ;
float log.x5_relerr(time, depth, lat, lon) ;
log.x5_relerr:long_name = "Relative error of log.x5" ;
log.x5_relerr:valid_min = 0.f ;
log.x5_relerr:valid_max = 1.f ;
log.x5_relerr:_FillValue = -99.f ;
log.x5_relerr:missing_value = -99.f ;
float databins(time, depth, lat, lon) ;
databins:long_name = "Logarithm10 of number of data in bins" ;
databins:valid_min = 0.f ;
databins:valid_max = 0.7f ;
databins:_FillValue = -99.f ;
databins:missing_value = -99.f ;
float outlbins(time, depth, lat, lon) ;
outlbins:long_name = "Logarithm10 of number of outliers data in
bins" ;
outlbins:valid_min = 0.f ;
outlbins:valid_max = -99.f ;
outlbins:_FillValue = -99.f ;
outlbins:missing_value = -99.f ;
float CLfield(time, depth, lat, lon) ;
CLfield:long_name = "Correlation length field" ;
CLfield:valid_min = 0.f ;
CLfield:valid_max = 1.5f ;
CLfield:_FillValue = -99.f ;
CLfield:missing_value = -99.f ;
float log.x5_deepest(time, lat, lon) ;
log.x5_deepest:long_name = "Deepest values of log.x5" ;
log.x5_deepest:units = "logab" ;
log.x5_deepest:valid_min = -0.7f ;
log.x5_deepest:valid_max = 5.8f ;
log.x5_deepest:_FillValue = -99.f ;
log.x5_deepest:missing_value = -99.f ;
float log.x5_deepest_L1(time, lat, lon) ;
log.x5_deepest_L1:long_name = "Deepest values of log.x5 masked
using relative error threshold 0.3" ;
log.x5_deepest_L1:units = "logab" ;
log.x5_deepest_L1:valid_min = -0.4f ;
log.x5_deepest_L1:valid_max = 5.8f ;
log.x5_deepest_L1:_FillValue = -99.f ;
log.x5_deepest_L1:missing_value = -99.f ;
float log.x5_deepest_L2(time, lat, lon) ;
log.x5_deepest_L2:long_name = "Deepest values of log.x5 masked
using relative error threshold 0.5" ;
log.x5_deepest_L2:units = "logab" ;
log.x5_deepest_L2:valid_min = -0.4f ;
log.x5_deepest_L2:valid_max = 5.8f ;
log.x5_deepest_L2:_FillValue = -99.f ;
log.x5_deepest_L2:missing_value = -99.f ;
// global attributes:
:Conventions = "CF-1.0" ;
:project = "SeaDataNetII" ;
:institution = "SAHFOS" ;
:production = "Flanders Marine Institute" ;
:data_access = "GHER OPENDAB:;
:WEB_visualisation = "" ;
:Author_e-mail = "***" ;
:date = "2015-11-25 04:21:30.00" ;
:title = "Diva analysis" ;
:file_name =
"../output/3Danalysis/log.x5.20132013.0103.10001.10001.anl.nc" ;
:source = "SAHFOS" ;
:comment = "No comment" ;
}
Part of the log error:
2018-07-04 17:16:08,825 DEBUG [geoserver.config] - Persisting coverage store
log.x5.20132013.0103.10001.10001.anl.nc
2018-07-04 17:16:08,827 DEBUG [geoserver.config] - Persisted
com.sun.proxy.$Proxy17 to
workspaces/testLennertS/log.x5.20132013.0103.10001.10001.anl.nc/coveragestore.xml
2018-07-04 17:16:08,828 DEBUG [geoserver.config] - Persisted
com.sun.proxy.$Proxy22 to global.xml
2018-07-04 17:16:08,834 TRACE [geotools.factory] - ENTRY (GridCoverageFactory)
2018-07-04 17:16:08,834 TRACE [geotools.factory] - RETURN
(GridCoverageFactory): found implementation GridCoverageFactory.
2018-07-04 17:16:08,834 DEBUG [io.netcdf] - Provided URL is a file
2018-07-04 17:16:08,834 DEBUG [imageio.netcdf] - Found a valid
FileImageInputStream
2018-07-04 17:16:08,840 DEBUG [imageio.netcdf] - File successfully opened
2018-07-04 17:16:08,851 DEBUG [geotools.jdbc] - CREATE CONNECTION
2018-07-04 17:16:08,948 DEBUG [geotools.jdbc] - CLOSE CONNECTION
2018-07-04 17:16:08,948 DEBUG [geotools.jdbc] - CREATE CONNECTION
2018-07-04 17:16:08,950 DEBUG [geotools.jdbc] - CLOSE CONNECTION
2018-07-04 17:16:08,951 DEBUG [io.catalog] -
BBOXFilterExtractor::extractBasicProperties(): Problems when opening the index,
no typenames for the schema are defined
2018-07-04 17:16:08,952 WARN [netcdf.NetCDFFormat] - Unable to connect
…
I looked up the documentation for netcdf files and this maillist archive, and
tried different things, for example to explicitly add the ‘nv’ dimension as a
variable (now ‘nv’ is only a dimension), but without success.
Does anyone know what (part) of my netcdf files are currently not supported?
Or where can I find more information?
Thanks a lot
Lennert Schepers
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--
Regards,
Daniele Romagnoli
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Please make sure you read the following two resources before posting to this
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- The GeoServer user list posting guidelines:
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If you want to request a feature or an improvement, also see this:
https://github.com/geoserver/geoserver/wiki/Successfully-requesting-and-integrating-new-features-and-improvements-in-GeoServer
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