As Jody says, Geotools is "just" a library. We used it as SOAP services, 
using AXIS. You implement your code, using geotools, wrap it up, and 
deploy. voila.
It also works as servlets, and others...
Have a look for, say AXIS2 java  tutorials, taht should help. And mavem 
makes it simple.
Hope this helps,
Martin


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