Thanks for your suggestions.
Feeling a little emboldened by your plausible suggested solution, I made a
small change to the configure directive after setting the shell variable :
./configure --enable-dd --enable-qd --enable-qhull --enable-matlab
--enable-python
--with-matlab-toolbox-directory=/usr/local/matlab/toolbox/getfem
--with-qd-lib-dir=/usr/lib --enable-matlab-rpc
(enabling matlab-rpc)
and tried again. Now the compilation quits with :
creating libgetfemint.la
(cd .libs && rm -f libgetfemint.la && ln -s ../libgetfemint.la
libgetfemint.la)
if gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I../../src -I../../src
-DGMM_USES_BLAS -I/usr/local/include -O3 -MT gfi_rpc_server.o -MD -MP -MF
".deps/gfi_rpc_server.Tpo" -c -o gfi_rpc_server.o gfi_rpc_server.c; \
then mv -f ".deps/gfi_rpc_server.Tpo" ".deps/gfi_rpc_server.Po";
else rm -f ".deps/gfi_rpc_server.Tpo"; exit 1; fi
if gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I../../src -I../../src
-DGMM_USES_BLAS -I/usr/local/include -O3 -MT gfi_rpc_svc.o -MD -MP -MF
".deps/gfi_rpc_svc.Tpo" -c -o gfi_rpc_svc.o gfi_rpc_svc.c; \
then mv -f ".deps/gfi_rpc_svc.Tpo" ".deps/gfi_rpc_svc.Po"; else rm
-f ".deps/gfi_rpc_svc.Tpo"; exit 1; fi
if gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I../../src -I../../src
-DGMM_USES_BLAS -I/usr/local/include -O3 -MT gfi_rpc_xdr.o -MD -MP -MF
".deps/gfi_rpc_xdr.Tpo" -c -o gfi_rpc_xdr.o gfi_rpc_xdr.c; \
then mv -f ".deps/gfi_rpc_xdr.Tpo" ".deps/gfi_rpc_xdr.Po"; else rm
-f ".deps/gfi_rpc_xdr.Tpo"; exit 1; fi
make[3]: *** No rule to make target `../src/getfem/libgetfem.la', needed by
`getfem_server'. Stop.
make[3]: Leaving directory `/usr/local/src/science/getfem/getfem++-3.0.3
/interface/src'
make[2]: *** [install-recursive] Error 1
make[2]: Leaving directory `/usr/local/src/science/getfem/getfem++-3.0.3
/interface/src'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/usr/local/src/science/getfem/getfem++-3.0.3
/interface'
make: *** [install-recursive] Error 1
**** Installation failed. Aborting package creation.
Cleaning up...OK
Bye.
I then removed the rpc option and ran make. It compiled without any
problems.
Any ideas ?
Thanks,
MS
On Dec 10, 2007 11:49 AM, Richard George <[EMAIL PROTECTED]> wrote:
> I think this could be a missing shell variable.
> if you type on the command line:
>
> echo $MATLAB
>
> it should report:
> /usr/local/matlab
>
> but I think the lines
>
> >
> > Here
> >
> > MATLAB = /
> >
> > Please contact:
> >
>
> mean this variable is unset and you will see just a blank line.
> try typing:
>
> export MATLAB=/usr/local/matlab
>
> (or the equivalent) and then 'make' again
>
> You should also put that command in your shell configuration file so you
> don't have to type it each time.
>
> Best wishes
>
> Richard
>
>
>
> PS. You might have to run 'make clean' and then './configure ----'
> I'm not sure if the $MATLAB variable is expanded when ./configure is
> run, or when make is run
>
>
>
>
>
> On Mon, 2007-12-10 at 10:46 -0700, Madhusudan Singh wrote:
> > Hello,
> >
> > I wish to use Getfem++'s matlab interface to solve Poisson's equation
> > in 3 dimensions. I have gmsh installed for providing the initial mesh
> > to getfem++. I am new to finite elements (but am well versed in
> > electromagnetics), but hope to learn enough to start using this tool
> > quickly.
> >
> > I would like to report a problem and seek its solution.
> >
> > Build system :
> >
> > Linux / Ubuntu 7.10 (Gutsy).
> > hostname = nanak
> > uname -m = i686
> > uname -r = 2.6.22-14-generic
> > uname -s = Linux
> > uname -v = #1 SMP Sun Oct 14 23:05:12 GMT 2007
> > QD and qhull libraries installed.
> > Matlab 7.4.0.336 (R2007a)
> > g++ (GCC) 4.1.3 20070929 (prerelease) (Ubuntu 4.1.2-16ubuntu2)
> > Copyright (C) 2006 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions. There
> > is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > Next, I created a directory - /usr/local/matlab/toolbox/getfem (my
> > matlab installation is under /usr/local/matlab) and issued the
> > following configure directive :
> >
> > ./configure --enable-dd --enable-qd --enable-qhull --enable-matlab
> > --enable-python
> > --with-matlab-toolbox-directory=/usr/local/matlab/toolbox/getfem
> > --with-qd-lib-dir=/usr/lib
> >
> > Some messages from the configure process :
> >
> > ...
> >
> > checking for mex... mex
> > checking for matlab path... /usr/local/matlab
> > checking for mex extension... .mexglx
> > Matlab release is : R14
> >
> > ...
> >
> > configure: creating ./config.status
> > config.status : creating Makefile
> > config.status: creating m4/Makefile
> > config.status: creating cubature/Makefile
> > config.status: creating superlu/Makefile
> > config.status: creating src/Makefile
> > config.status: creating tests/Makefile
> > config.status: creating tests/meshes/Makefile
> > config.status: creating tests-2.0/Makefile
> > config.status: creating contrib/Makefile
> > config.status: creating contrib/icare/Makefile
> > config.status: creating contrib/delaminated_crack/Makefile
> > config.status: creating contrib/static_friction/Makefile
> > config.status: creating contrib/bimaterial_crack_test/Makefile
> > config.status: creating contrib/bimat_contact_crack_test/Makefile
> > config.status: creating contrib/mixed_elastostatic/Makefile
> > config.status: creating contrib/xfem_contact/Makefile
> > config.status: creating contrib/crack_plate/Makefile
> > config.status: creating contrib/inter_element_test/Makefile
> > config.status: creating contrib/aposteriori/Makefile
> > config.status: creating bin/Makefile
> > config.status: creating interface/Makefile
> > config.status: creating interface/bin/Makefile
> > config.status: creating interface/src/Makefile
> > config.status: creating interface/src/matlab/Makefile
> > config.status: creating interface/src/matlab/@gfCvStruct/Makefile
> > config.status: creating interface/src/matlab/@gfEltm/Makefile
> > config.status: creating interface/src/matlab/@gfFem/Makefile
> > config.status: creating interface/src/matlab/@gfGeoTrans/Makefile
> > config.status: creating interface/src/matlab/@gfInteg/Makefile
> > config.status: creating interface/src/matlab/@gfMesh/Makefile
> > config.status: creating interface/src/matlab/@gfMeshFem /Makefile
> > config.status: creating interface/src/matlab/@gfSlice/Makefile
> > config.status: creating interface/src/matlab/@gfMeshIm/Makefile
> > config.status: creating interface/src/matlab/@gfSpmat/Makefile
> > config.status : creating interface/src/matlab/@gfPrecond/Makefile
> > config.status: creating interface/src/matlab/@gfMdBrick/Makefile
> > config.status: creating interface/src/matlab/@gfMdState/Makefile
> > config.status: creating interface/src/matlab/@gfLevelSet /Makefile
> > config.status: creating interface/src/matlab/@gfMeshLevelSet/Makefile
> > config.status: creating interface/src/matlab/private/Makefile
> > config.status: creating interface/src/python/Makefile
> > config.status : creating interface/src/python/setup.py
> > config.status: creating interface/tests/Makefile
> > config.status: creating interface/tests/meshes/Makefile
> > config.status: creating interface/tests/matlab/Makefile
> > config.status : creating interface/tests/matlab/private/Makefile
> > config.status: creating interface/tests/python/Makefile
> > config.status: creating getfem-config
> > config.status: WARNING: getfem-config.in seems to ignore the
> > --datarootdir setting
> > config.status: creating getfem-config-notinstalled
> > config.status: creating gmm-config
> > config.status: WARNING: gmm-config.in seems to ignore the
> > --datarootdir setting
> > config.status: creating config.h
> > config.status: executing src/getfem/getfem_arch_config.h commands
> > config.status: creating src/getfem/getfem_arch_config.h - prefix
> > GETFEM for config.h defines
> > config.status: executing depfiles commands
> >
> >
> ------------------------------------------------------------------------------
> > If you want to build the shared library of getfem++, use
> > --enable-shared
> > (by default, only the static one will be built)
> > Using the QD library:
> > high precision (quad-double precision) polynomials and integration
> > methods are enabled
> > Using the qhull library for delaunay triangulations.
> >
> > Link options for the BLAS library: -lblas -lg2c
> > You can give the location of your prefered blas library with either
> > the --with-blas=<lib> option, or the BLAS_LIBS environment variable
> > for example: ./configure BLAS_LIBS="-L/usr/lib/atlas/sse2 -lblas"
> >
> > ---------------------------------------
> > Ready to build getfem++
> > building MATLAB interface: YES
> > building PYTHON interface: YES (requires numarray)
> > ---------------------------------------
> >
> >
> > I next use checkinstall to create a debian/ubuntu package (this just
> > calls make and creates a convenient deb package).
> >
> >
> > Compilation runs for a long time and then stops at :
> >
> > mex -output gf_matlab -g CDEBUGFLAGS="-O3" LD="g++" \
> > -I. -I./.. -DMATLAB_RELEASE=14 \
> > ./gfm_mex.c ./gfm_common.c ./../gfi_array.c \
> > ../.libs/libgetfemint.a ../../../src/.libs/libgetfem.a -lqhull
> > -lblas -lg2c /usr/lib/libqd.a -lm || (rm gf_matlab.mexglx; false)
> > /bin/pwd: couldn't find directory entry in `..' with matching i-node
> > /bin/pwd: couldn't find directory entry in `../../..' with matching
> > i-node
> >
> > Sorry! No options file was found for mex.
> > The mex script must be able to source
> > an options file to define compiler flags
> > and other settings. This options file
> > is normally found in MATLAB/bin/mexopts.sh.
> > Please check to make sure that your installation
> > is complete and includes this file.
> >
> > Here
> >
> > MATLAB = /
> >
> > Please contact:
> >
> > MathWorks Technical Support
> >
> > for further assistance.
> >
> > rm: cannot remove `gf_matlab.mexglx': No such file or directory
> > make[4]: *** [gf_matlab.mexglx] Error 1
> > make[4]: Leaving directory `/usr/local/src/science/getfem/getfem
> > ++-3.0.3/interface/src/matlab'
> > make[3]: *** [install-recursive] Error 1
> > make[3]: Leaving directory `/usr/local/src/science/getfem/getfem++-
> > 3.0.3/interface/src/matlab'
> > make[2]: *** [install-recursive] Error 1
> > make[2]: Leaving directory `/usr/local/src/science/getfem/getfem
> > ++-3.0.3/interface/src'
> > make[1]: *** [install-recursive] Error 1
> > make[1]: Leaving directory `/usr/local/src/science/getfem/getfem++-
> > 3.0.3/interface'
> > make: *** [install-recursive] Error 1
> >
> > **** Installation failed. Aborting package creation.
> >
> > Cleaning up...OK
> >
> > Bye.
> >
> > Its strange that the process above is using the matlab root directory
> > as '/' above after discovering it (correctly) in the configure process
> > to be /usr/local/matlab.
> > The detected matlab release is also wrong.
> >
> > Could you please advise as to how these bugs are to be handled ?
> >
> > I am attaching the config.log file to this email for your convenience.
> >
> > With regards,
> >
> > MS
> > _______________________________________________
> > Getfem-users mailing list
> > [email protected]
> > https://mail.gna.org/listinfo/getfem-users
>
>
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