When I first cloned a remote repo, it had several subdirectories, and I had 
Eclipse create projects automatically.

Since that time, all but one of those subdirectories have been removed from 
master.

I want to just reset my local repo to match the remote, but try as I might, 
it just is not removing those leftover peer subdirectories (and contents) 
that are now removed from master on the remote.

I've tried "git pull", "git pull -f", and "git reset --hard" both from the 
command line and from Eclipse.  The phantom directories are not removed.

I know I could just nuke my local repo and reclone from the remote repo, 
but I do have some stashes that I'd like to preserve for now.

What else do I have to do to clean up these phantoms?

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