The current git-fast-import would not correctly handle such a commit stream
in which a file was deleted and at the same time a directory with the same
name was created. All paths under the newly created directory will be lost
after the importing.
---
 fast-import.c | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/fast-import.c b/fast-import.c
index eed97c8..8874b4b 100644
--- a/fast-import.c
+++ b/fast-import.c
@@ -1595,6 +1595,15 @@ static int tree_content_remove(
                                 * exist and need not be deleted.
                                 */
                                return 1;
+                       if (!slash1 && S_ISREG(e->versions[0].mode) && 
S_ISDIR(e->versions[1].mode))
+                           /*
+                            * If p names a file in some subdirectory and in
+                            * some commit that file got deleted, a directory
+                            * with the same name was set up in the same 
directory,
+                            * then there is no need to step into for further
+                            * iteration or deletion.
+                            */
+                               return 0;
                        if (!slash1 || !S_ISDIR(e->versions[1].mode))
                                goto del_entry;
                        if (!e->tree)
-- 
1.7.11.4

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