For anyone who stumbles upon this in the future, I found a very simple
workaround to force the commit hooks (including commit-msg) to run
following a merge operation:  Simply create a post-merge hook which
triggers an amended commit with no changes.

post-merge hook:

#!/bin/bash
git commit --amend -C HEAD

On Fri, Sep 15, 2017 at 3:53 PM, Junio C Hamano <gits...@pobox.com> wrote:
> Joseph Dunne <jdunne...@gmail.com> writes:
>
>> Valid point.  The way my project is set up I always get a conflict on
>> merge operations, so technically all my merges (except fast forward
>> merges) end with a git-commit, which of course runs the commit-msg
>> hook.  It seems everything is working as designed.  Shame there isn't
>> a merge-msg hook.
>>
>> It seems I have no choice but to work around this issue.  Thanks for your 
>> help.
>
> I think Stefan wanted to say in his message upthread that with an
> update still in flight you may not need a workaround.

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