Incorporating Torsten suggestions and some documentation:

---
 Documentation/config.txt |   12 ++++++++++++
 builtin/init-db.c        |    4 +++-
 config.c                 |    5 +++++
 environment.c            |    1 +
 refs.c                   |   26 +++++++++++++++++++++++---
 5 files changed, 44 insertions(+), 4 deletions(-)

diff --git a/Documentation/config.txt b/Documentation/config.txt
index 040197b..c0a6c5c 100644
--- a/Documentation/config.txt
+++ b/Documentation/config.txt
@@ -2077,6 +2077,18 @@ receive.shallowupdate::
  If set to true, .git/shallow can be updated when new refs
  require new shallow roots. Otherwise those refs are rejected.

+refs.ignorecase::
+ If true, this option prevents the creation of ref names
+ that differ in case only. For example, if a branch Foo exists,
+ `git checkout -b foo` would fail. This is the case
+ across ref hierarchies, so `git tag foo` would also fail.
+ This option is useful on filesystems that are not case
+ sensitive.
++
+The default is false, except linkgit:git-clone[1] or linkgit:git-init[1]
+will probe and set refs.ignorecase true if appropriate when the repository
+is created. refs.ignorecase will also be true if core.ignorecase is true.
+
 remote.pushdefault::
  The remote to push to by default.  Overrides
  `branch.<name>.remote` for all branches, and is overridden by
diff --git a/builtin/init-db.c b/builtin/init-db.c
index c7c76bb..7c6931b 100644
--- a/builtin/init-db.c
+++ b/builtin/init-db.c
@@ -288,8 +288,10 @@ static int create_default_files(const char *template_path)
  /* Check if the filesystem is case-insensitive */
  path[len] = 0;
  strcpy(path + len, "CoNfIg");
- if (!access(path, F_OK))
+ if (!access(path, F_OK)) {
  git_config_set("core.ignorecase", "true");
+ git_config_set("refs.ignorecase", "true");
+ }
  probe_utf8_pathname_composition(path, len);
  }

diff --git a/config.c b/config.c
index 314d8ee..797391a 100644
--- a/config.c
+++ b/config.c
@@ -702,6 +702,11 @@ static int git_default_core_config(const char
*var, const char *value)
  return 0;
  }

+ if (!strcmp(var, "refs.ignorecase")) {
+ refs_ignore_case = git_config_bool(var, value);
+ return 0;
+ }
+
  if (!strcmp(var, "core.attributesfile"))
  return git_config_pathname(&git_attributes_file, var, value);

diff --git a/environment.c b/environment.c
index 4a3437d..2eced48 100644
--- a/environment.c
+++ b/environment.c
@@ -18,6 +18,7 @@ int check_stat = 1;
 int has_symlinks = 1;
 int minimum_abbrev = 4, default_abbrev = 7;
 int ignore_case;
+int refs_ignore_case = -1;
 int assume_unchanged;
 int prefer_symlink_refs;
 int is_bare_repository_cfg = -1; /* unspecified */
diff --git a/refs.c b/refs.c
index 89228e2..1915ec2 100644
--- a/refs.c
+++ b/refs.c
@@ -359,16 +359,26 @@ struct string_slice {
  const char *str;
 };

-static int ref_entry_cmp_sslice(const void *key_, const void *ent_)
+static int ref_entry_ncmp(const void *key_, const void *ent_, int
(*cmp_fn)(const char *, const char *, size_t))
 {
  const struct string_slice *key = key_;
  const struct ref_entry *ent = *(const struct ref_entry * const *)ent_;
- int cmp = strncmp(key->str, ent->name, key->len);
+ int cmp = cmp_fn(key->str, ent->name, key->len);
  if (cmp)
  return cmp;
  return '\0' - (unsigned char)ent->name[key->len];
 }

+static int ref_entry_cmp_sslice(const void *key_, const void *ent_)
+{
+ return ref_entry_ncmp(key_, ent_, strncmp);
+}
+
+static int ref_entry_casecmp_sslice(const void *key_, const void *ent_)
+{
+ return ref_entry_ncmp(key_, ent_, strncasecmp);
+}
+
 /*
  * Return the index of the entry with the given refname from the
  * ref_dir (non-recursively), sorting dir if necessary.  Return -1 if
@@ -378,6 +388,7 @@ static int search_ref_dir(struct ref_dir *dir,
const char *refname, size_t len)
 {
  struct ref_entry **r;
  struct string_slice key;
+ int (*cmp_fn)(const void *, const void *);

  if (refname == NULL || !dir->nr)
  return -1;
@@ -385,8 +396,17 @@ static int search_ref_dir(struct ref_dir *dir,
const char *refname, size_t len)
  sort_ref_dir(dir);
  key.len = len;
  key.str = refname;
+
+ if(refs_ignore_case < 0)
+ refs_ignore_case  = ignore_case;
+
+ if(ignore_case)
+ cmp_fn = ref_entry_casecmp_sslice;
+ else
+ cmp_fn = ref_entry_cmp_sslice;
+
  r = bsearch(&key, dir->entries, dir->nr, sizeof(*dir->entries),
-    ref_entry_cmp_sslice);
+ cmp_fn);

  if (r == NULL)
  return -1;
--
--
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