(alias R=$GIT_COMMON_DIR/repos/<id>)

 - linked checkouts are supposed to keep its location in $R/gitdir up
   to date. The use case is auto fixup after a manual checkout move.

 - linked checkouts are supposed to update mtime of $R/gitdir. If
   $R/gitdir's mtime is older than a limit, and it points to nowhere,
   repos/<id> is to be pruned.

 - If $R/locked exists, repos/<id> is not supposed to be pruned. If
   $R/locked exists and $R/gitdir's mtime is older than a really long
   limit, warn about old unused repo.

 - "git checkout --to" is supposed to make a hard link named $R/link
   pointing to the .git file on supported file systems to help detect
   the user manually deleting the checkout. If $R/link exists and its
   link count is greated than 1, the repo is kept.

Signed-off-by: Nguyễn Thái Ngọc Duy <pclo...@gmail.com>
---
 Documentation/git-prune.txt                |  3 +
 Documentation/gitrepository-layout.txt     | 19 ++++++
 builtin/checkout.c                         | 14 +++++
 builtin/prune.c                            | 99 ++++++++++++++++++++++++++++++
 setup.c                                    | 13 ++++
 t/t2026-prune-linked-checkouts.sh (new +x) | 84 +++++++++++++++++++++++++
 6 files changed, 232 insertions(+)
 create mode 100755 t/t2026-prune-linked-checkouts.sh

diff --git a/Documentation/git-prune.txt b/Documentation/git-prune.txt
index 7a493c8..50e39ec 100644
--- a/Documentation/git-prune.txt
+++ b/Documentation/git-prune.txt
@@ -48,6 +48,9 @@ OPTIONS
 --expire <time>::
        Only expire loose objects older than <time>.
 
+--repos::
+       Prune directories in $GIT_DIR/repos.
+
 <head>...::
        In addition to objects
        reachable from any of our references, keep objects
diff --git a/Documentation/gitrepository-layout.txt 
b/Documentation/gitrepository-layout.txt
index 543d874..bed4f1a 100644
--- a/Documentation/gitrepository-layout.txt
+++ b/Documentation/gitrepository-layout.txt
@@ -256,6 +256,25 @@ repos::
        $GIT_COMMON_DIR is set and "$GIT_COMMON_DIR/repos" will be
        used instead.
 
+repos/<id>/gitdir::
+       A text file containing the absolute path back to the .git file
+       that points to here. This is used to check if the linked
+       repository has been manually removed and there is no need to
+       keep this directory any more. mtime of this file should be
+       updated every time the linked repository is accessed.
+
+repos/<id>/locked::
+       If this file exists, the linked repository may be on a
+       portable device and not available. It does not mean that the
+       linked repository is gone and `repos/<id>` could be
+       removed. The file's content contains a reason string on why
+       the repository is locked.
+
+repos/<id>/link::
+       If this file exists, it is a hard link to the linked .git
+       file. It is used to detect if the linked repository is
+       manually removed.
+
 SEE ALSO
 --------
 linkgit:git-init[1],
diff --git a/builtin/checkout.c b/builtin/checkout.c
index fe24766..5b93f49 100644
--- a/builtin/checkout.c
+++ b/builtin/checkout.c
@@ -898,12 +898,22 @@ static int prepare_linked_checkout(const struct 
checkout_opts *opts,
        junk_git_dir = sb_repo.buf;
        is_junk = 1;
 
+       /*
+        * lock the incomplete repo so prune won't delete it, unlock
+        * after the preparation is over.
+        */
+       strbuf_addf(&sb, "%s/locked", sb_repo.buf);
+       write_file(sb.buf, 1, "initializing\n");
+
        strbuf_addf(&sb_git, "%s/.git", path);
        if (safe_create_leading_directories_const(sb_git.buf))
                die_errno(_("could not create leading directories of '%s'"),
                          sb_git.buf);
        junk_work_tree = path;
 
+       strbuf_reset(&sb);
+       strbuf_addf(&sb, "%s/gitdir", sb_repo.buf);
+       write_file(sb.buf, 1, "%s\n", real_path(sb_git.buf));
        write_file(sb_git.buf, 1, "gitdir: %s/repos/%s\n",
                   real_path(get_git_common_dir()), name);
        /*
@@ -912,6 +922,7 @@ static int prepare_linked_checkout(const struct 
checkout_opts *opts,
         * value would do because this value will be ignored and
         * replaced at the next (real) checkout.
         */
+       strbuf_reset(&sb);
        strbuf_addf(&sb, "%s/HEAD", sb_repo.buf);
        write_file(sb.buf, 1, "%s\n", sha1_to_hex(new->commit->object.sha1));
        strbuf_reset(&sb);
@@ -930,6 +941,9 @@ static int prepare_linked_checkout(const struct 
checkout_opts *opts,
        ret = run_command(&cp);
        if (!ret)
                is_junk = 0;
+       strbuf_reset(&sb);
+       strbuf_addf(&sb, "%s/locked", sb_repo.buf);
+       unlink_or_warn(sb.buf);
        strbuf_release(&sb);
        strbuf_release(&sb_repo);
        strbuf_release(&sb_git);
diff --git a/builtin/prune.c b/builtin/prune.c
index 144a3bd..28b7adf 100644
--- a/builtin/prune.c
+++ b/builtin/prune.c
@@ -112,6 +112,95 @@ static void prune_object_dir(const char *path)
        }
 }
 
+static int prune_repo_dir(const char *id, struct stat *st, struct strbuf 
*reason)
+{
+       char *path;
+       int fd, len;
+
+       if (!is_directory(git_path("repos/%s", id))) {
+               strbuf_addf(reason, _("Removing repos/%s: not a valid 
directory"), id);
+               return 1;
+       }
+       if (file_exists(git_path("repos/%s/locked", id)))
+               return 0;
+       if (stat(git_path("repos/%s/gitdir", id), st)) {
+               st->st_mtime = expire;
+               strbuf_addf(reason, _("Removing repos/%s: gitdir file does not 
exist"), id);
+               return 1;
+       }
+       fd = open(git_path("repos/%s/gitdir", id), O_RDONLY);
+       if (fd < 0) {
+               st->st_mtime = expire;
+               strbuf_addf(reason, _("Removing repos/%s: unable to read gitdir 
file (%s)"),
+                           id, strerror(errno));
+               return 1;
+       }
+       len = st->st_size;
+       path = xmalloc(len + 1);
+       read_in_full(fd, path, len);
+       close(fd);
+       while (len && (path[len - 1] == '\n' || path[len - 1] == '\r'))
+               len--;
+       if (!len) {
+               st->st_mtime = expire;
+               strbuf_addf(reason, _("Removing repos/%s: invalid gitdir 
file"), id);
+               free(path);
+               return 1;
+       }
+       path[len] = '\0';
+       if (!file_exists(path)) {
+               struct stat st_link;
+               free(path);
+               /*
+                * the repo is moved manually and has not been
+                * accessed since?
+                */
+               if (!stat(git_path("repos/%s/link", id), &st_link) &&
+                   st_link.st_nlink > 1)
+                       return 0;
+               strbuf_addf(reason, _("Removing repos/%s: gitdir file points to 
non-existent location"), id);
+               return 1;
+       }
+       free(path);
+       return 0;
+}
+
+static void prune_repos_dir(void)
+{
+       struct strbuf reason = STRBUF_INIT;
+       struct strbuf path = STRBUF_INIT;
+       DIR *dir = opendir(git_path("repos"));
+       struct dirent *d;
+       int ret;
+       struct stat st;
+       if (!dir)
+               return;
+       while ((d = readdir(dir)) != NULL) {
+               if (!strcmp(d->d_name, ".") || !strcmp(d->d_name, ".."))
+                       continue;
+               strbuf_reset(&reason);
+               if (!prune_repo_dir(d->d_name, &st, &reason) ||
+                   st.st_mtime > expire)
+                       continue;
+               if (show_only || verbose)
+                       printf("%s\n", reason.buf);
+               if (show_only)
+                       continue;
+               strbuf_reset(&path);
+               strbuf_addstr(&path, git_path("repos/%s", d->d_name));
+               ret = remove_dir_recursively(&path, 0);
+               if (ret < 0 && errno == ENOTDIR)
+                       ret = unlink(path.buf);
+               if (ret)
+                       error(_("failed to remove: %s"), strerror(errno));
+       }
+       closedir(dir);
+       if (!show_only)
+               rmdir(git_path("repos"));
+       strbuf_release(&reason);
+       strbuf_release(&path);
+}
+
 /*
  * Write errors (particularly out of space) can result in
  * failed temporary packs (and more rarely indexes and other
@@ -138,10 +227,12 @@ int cmd_prune(int argc, const char **argv, const char 
*prefix)
 {
        struct rev_info revs;
        struct progress *progress = NULL;
+       int prune_repos = 0;
        const struct option options[] = {
                OPT__DRY_RUN(&show_only, N_("do not remove, show only")),
                OPT__VERBOSE(&verbose, N_("report pruned objects")),
                OPT_BOOL(0, "progress", &show_progress, N_("show progress")),
+               OPT_BOOL(0, "repos", &prune_repos, N_("prune .git/repos/")),
                OPT_EXPIRY_DATE(0, "expire", &expire,
                                N_("expire objects older than <time>")),
                OPT_END()
@@ -154,6 +245,14 @@ int cmd_prune(int argc, const char **argv, const char 
*prefix)
        init_revisions(&revs, prefix);
 
        argc = parse_options(argc, argv, prefix, options, prune_usage, 0);
+
+       if (prune_repos) {
+               if (argc)
+                       die(_("--repos does not take extra arguments"));
+               prune_repos_dir();
+               return 0;
+       }
+
        while (argc--) {
                unsigned char sha1[20];
                const char *name = *argv++;
diff --git a/setup.c b/setup.c
index 8f90bc3..da2d669 100644
--- a/setup.c
+++ b/setup.c
@@ -390,6 +390,17 @@ static int check_repository_format_gently(const char 
*gitdir, int *nongit_ok)
        return ret;
 }
 
+static void update_linked_gitdir(const char *gitfile, const char *gitdir)
+{
+       struct strbuf path = STRBUF_INIT;
+       struct stat st;
+
+       strbuf_addf(&path, "%s/gitfile", gitdir);
+       if (stat(path.buf, &st) || st.st_mtime + 24 * 3600 < time(NULL))
+               write_file(path.buf, 0, "%s\n", gitfile);
+       strbuf_release(&path);
+}
+
 /*
  * Try to read the location of the git directory from the .git file,
  * return path to git directory if found.
@@ -438,6 +449,8 @@ const char *read_gitfile(const char *path)
 
        if (!is_git_directory(dir))
                die("Not a git repository: %s", dir);
+
+       update_linked_gitdir(path, dir);
        path = real_path(dir);
 
        free(buf);
diff --git a/t/t2026-prune-linked-checkouts.sh 
b/t/t2026-prune-linked-checkouts.sh
new file mode 100755
index 0000000..4ccfa4e
--- /dev/null
+++ b/t/t2026-prune-linked-checkouts.sh
@@ -0,0 +1,84 @@
+#!/bin/sh
+
+test_description='prune $GIT_DIR/repos'
+
+. ./test-lib.sh
+
+test_expect_success 'prune --repos on normal repo' '
+       git prune --repos &&
+       test_must_fail git prune --repos abc
+'
+
+test_expect_success 'prune files inside $GIT_DIR/repos' '
+       mkdir .git/repos &&
+       : >.git/repos/abc &&
+       git prune --repos --verbose >actual &&
+       cat >expect <<EOF &&
+Removing repos/abc: not a valid directory
+EOF
+       test_i18ncmp expect actual &&
+       ! test -f .git/repos/abc &&
+       ! test -d .git/repos
+'
+
+test_expect_success 'prune directories without gitdir' '
+       mkdir -p .git/repos/def/abc &&
+       : >.git/repos/def/def &&
+       cat >expect <<EOF &&
+Removing repos/def: gitdir file does not exist
+EOF
+       git prune --repos --verbose >actual &&
+       test_i18ncmp expect actual &&
+       ! test -d .git/repos/def &&
+       ! test -d .git/repos
+'
+
+test_expect_success POSIXPERM 'prune directories with unreadable gitdir' '
+       mkdir -p .git/repos/def/abc &&
+       : >.git/repos/def/def &&
+       : >.git/repos/def/gitdir &&
+       chmod u-r .git/repos/def/gitdir &&
+       git prune --repos --verbose >actual &&
+       test_i18ngrep "Removing repos/def: unable to read gitdir file" actual &&
+       ! test -d .git/repos/def &&
+       ! test -d .git/repos
+'
+
+test_expect_success 'prune directories with invalid gitdir' '
+       mkdir -p .git/repos/def/abc &&
+       : >.git/repos/def/def &&
+       : >.git/repos/def/gitdir &&
+       git prune --repos --verbose >actual &&
+       test_i18ngrep "Removing repos/def: invalid gitdir file" actual &&
+       ! test -d .git/repos/def &&
+       ! test -d .git/repos
+'
+
+test_expect_success 'prune directories with gitdir pointing to nowhere' '
+       mkdir -p .git/repos/def/abc &&
+       : >.git/repos/def/def &&
+       echo "$TRASH_DIRECTORY"/nowhere >.git/repos/def/gitdir &&
+       git prune --repos --verbose >actual &&
+       test_i18ngrep "Removing repos/def: gitdir file points to non-existent 
location" actual &&
+       ! test -d .git/repos/def &&
+       ! test -d .git/repos
+'
+
+test_expect_success 'not prune locked checkout' '
+       test_when_finished rm -r .git/repos
+       mkdir -p .git/repos/ghi &&
+       : >.git/repos/ghi/locked &&
+       git prune --repos &&
+       test -d .git/repos/ghi
+'
+
+test_expect_success 'not prune recent checkouts' '
+       test_when_finished rm -r .git/repos
+       mkdir zz &&
+       mkdir -p .git/repos/jlm &&
+       echo "$TRASH_DIRECTORY"/zz >.git/repos/jlm/gitdir &&
+       git prune --repos --verbose &&
+       test -d .git/repos/jlm
+'
+
+test_done
-- 
1.9.1.346.ga2b5940

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