Markdown was causing issues identical to what was mentioned above for me. I 
used ProcessHacker to look at the thread and frame stack causing the delay.  

I noticed that when the problem occurs the program is also iterating through 
the fonts in the system very very slow locking up geany for several minutes 
until it is complete.  

There were calls to functions in libfontconfig-1.dll on the stack frame of the 
thread using 12% of my cpu, and I saw handles opening and closing for fonts 
about once every second or several seconds for each font.

While it was happening reproducibly yesterday and the previous weeks on 1.30 
and 1.31 and showed the same symptoms, it stopped doing so today(fortunately 
for me) and I could enable/disable the plugin without issue right now.  If it 
reoccurs I'll provide the stack frame and perhaps it will help figure things 
out further.

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