Hello Prakher, Does chr1 have negative coordinates as well? That is, is there a GFF line something like this:
chr1 UCSC chromosome -10000 250000000 . . . Sequence chr1 I suspect that GBrowse has to know that negative coordinates are possible to display on the reference sequence. Scott On Tue, 2008-01-29 at 19:07 +0530, Prakher Singhal wrote: > Hello, > I am having problem in displaying the values which starts from > negative(-) > value end ends at positive(+) value. > Here is an excerpt from the file is (Repeat data)..... > > chr1 UCSC repeat -8865 54 . - . LTR HUERS-P3 ; > Note "Repeat Family-ERV1" > chr1 UCSC repeat -8813 106 . - . LTR HUERS-P3 ; > Note "Repeat Family-ERV1" > chr1 UCSC repeat -8705 214 . - . LTR HUERS-P3 ; > Note "Repeat Family-ERV1" > chr1 UCSC repeat -8583 43 . - . LTR HERV17 ; > Note "Repeat Family-ERV1" > chr1 UCSC repeat -8454 465 . - . LTR HUERS-P3 ; > Note "Repeat Family-ERV1" > chr1 UCSC repeat -8357 687 . - . LTR LTR39-int ; > Note "Repeat Family-ERV1" > > GBrowse is displaying only the positive region. Please let me know, how > to overcome this problem? > and Is there any aggregator which deals with negative start point values? > > Waiting for Reply, > > Regards, > Prakher Singhal > Computer Programmer > Institute of Bioinformatics and applied Biotechnology > Bangalore 560 066, > Tel: +91 (80) 2841-0029, 2841-2769 > Mob: +91 9886875191 > http://www.ibab.ac.in/ > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > Gmod-gbrowse mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse -- ------------------------------------------------------------------------ Scott Cain, Ph. D. [EMAIL PROTECTED] GMOD Coordinator (http://www.gmod.org/) 216-392-3087 Cold Spring Harbor Laboratory ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
