Hi Sean,
What format are you using to load the wig data? If you are using BED format
it will take forever. If you use variable or fixed step, then the whole
genome should complete in a few hours.
Lincoln
On Feb 19, 2008 7:33 AM, Sean O'Keeffe <[EMAIL PROTECTED]> wrote:
> Hi all,
> I'm currently tasked with displaying phastCons data in Gbrowse. I'm
> using Bio::Graphics::Wiggle::Loader to load each data set (chromosome.pp
> file). Has anyone done this before or give me an estimate on the time
> needed? I started on Friday evening with chr1.pp and it's still loading
> the *.wig file.
> chr1.pp is ~1.4GB in size as is chr2.pp but the chromosome size gets
> progessively smaller. I've got this this job running on a 6ghz dual core
> linux with 4gb of memory.
>
> Thanks,
> Sean.
>
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