Hee Shin,
Here is a suggestion, if you haven't tried it. Be warned that I haven't tried it. Using these load options: gmod_bulk_load_gff3.pl --analysis=NimbleScan.dataset1 NimbleScan.gff3 gmod_bulk_load_gff3.pl --analysis=NGS_probe.dataset1 NGS_probe.gff3 should load the data to chado analysisfeatures with these columns: table analysis.program=NimbleScan, .source=dataset1 table analysis.program=NGS_probe, .source=dataset1 table analysisfeature.significance=GFF.score and the gbrowse chado adaptor should then find feature.score from analysisfeature.significance column. This may also change the GFF feature.source values for gbrowse.conf (I'm not sure): > feature = microarray_oligo:NimbleScan.dataset1 > feature = region:NGS_probe.dataset1 You don't need to add the .dataset1 source name for the analysis. But that would be good practice in case you want to add NimbleScan.dataset2, .dataset3, etc. - Don -- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405 -- [EMAIL PROTECTED]://marmot.bio.indiana.edu/ ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
