Hi Wes, The first issue should be resolved. The javascript navigation/selection object should now be smart enough to refuse to fall off the ends of the chromosome. The second issue should also be resolved.
Sheldon On Mon, Feb 25, 2008 at 6:45 PM, Wes Barris <[EMAIL PROTECTED]> wrote: > Sheldon McKay wrote: > > Hi Wes, > > > > > As always, thanks for the bug reports. Clicking on features should > > have the correct behavior now. The debugging info should also no > > longer accumulate in your error log. I am not able to reproduce the > > issue with clicking on the ends of the overview or region panels. > > Could you please provide details of your browser/OS and an error > > messages in the apache error log or javascript console? > > Thanks. Clicking on features with draggable tracks disabled now works > properly and there is no more debugging in the error_log. I can see > two problems that remain: > > 1) I can click anywhere within the span of the chromosome displayed in > the gray overview area to re-center the display. However, if I click > to the left of the chromosome (but still within the gray area) or to > the right of the chromosome (but still within the gray area), I get > this error displayed in the gbrowse page: > > The landmark named BTA1:-2911344..-2011344 is not recognized. See the > help pages for suggestions. > > Try it: http://www.livestockgenomics.csiro.au/perl/gbrowse.cgi/bova4/ > > I'm using a CVS check of gbrowse today. Firefox 2.0.0.12. CentOS > release 4.6 (Final) > No errors are listed in the web server error log nor the javascript error > console. > > 2) When draggable tracks are enabled, the track categories are not displayed. > Using http://www.livestockgenomics.csiro.au/perl/gbrowse.cgi/bova4/ > display Cow Refseq mRNA and Human Refseq. With draggable tracks disabled, > the details area clearly shows the "Cow" and "Human" categories in > parentheses. > Now enable draggable tracks. The categories are no longer displayed in > the > details area. > > > > > > Thanks, > > Sheldon > > > > > > On Sun, Feb 24, 2008 at 7:05 PM, Wes Barris <[EMAIL PROTECTED]> wrote: > >> Sheldon McKay wrote: > >> > Hi Wes, > >> > > >> > I have done some work on this. Please try a new checkout and let me > >> > know if this is still a problem. > >> > >> Hi Sheldon, > >> > >> I just did a CVS checkout and installed. The problem described below > >> still exists. Additionally, I can no longer click on a displayed feature > >> and display its details page (when draggable tracks are turned off). I > >> also notice that for each feature displayed, a lot of debugging is being > >> written into the web server error_log file. The debugging info looks > like > >> this: > >> > >> <span > style="left:49px;width:611px;top:340px;cursor:pointer;position:absolute;height:33px;" > name="detail_image_map" title="Refseq mRNA: BTA1:15252826..15252986 > XM_871051.2:1..161" > >> onclick="function(){window.location = > '../../gbrowse_details.cgi/bova4?name=XM_871051.2;class=Accession'}" ></span> > >> > >> > >> > >> > >> > >> > Sheldon > >> > > >> > On Feb 19, 2008 11:07 PM, Wes Barris <[EMAIL PROTECTED]> wrote: > >> >> Hi, > >> >> > >> >> When draggable tracks are turned off (check box unticked), I am not > able to > >> >> pan or zoom by clicking on the chromosome in the Overview or Region > areas. > >> >> > >> >> If I tick the Draggable tracks box and then click on "Update Image" I > can > >> >> pan and zoom by clicking (and dragging) on the chromosome in the > Overview > >> >> and Region areas. > >> >> > >> >> However, if I want to go to either end of the chromosome, I used to > be able > >> >> to click just before the beginning (or just past the end) of the > chromosome > >> >> to display either end. If I do this now, I get an error like this: > >> >> > >> >> The landmark named BTA1:-2463827..-1563827 is not recognized. See the > help pages for suggestions. > >> >> > >> >> I am using a CVS version of gbrowse that is roughly three weeks old. > >> >> -- > >> >> Wes Barris <[EMAIL PROTECTED]> > >> >> > >> >> > ------------------------------------------------------------------------- > >> >> This SF.net email is sponsored by: Microsoft > >> >> Defy all challenges. Microsoft(R) Visual Studio 2008. > >> >> http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > >> >> _______________________________________________ > >> >> Gmod-gbrowse mailing list > >> >> [email protected] > >> >> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > >> >> > >> > > >> > > >> > > >> > >> > >> -- > >> Wes Barris <[EMAIL PROTECTED]> > >> > > > > > > > > > -- > Wes Barris <[EMAIL PROTECTED]> > -- -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- Sheldon McKay, PhD Cold Spring Harbor Laboratory 1 Bungtown Road Cold Spring Harbor, NY 11724 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
