Hi all, I would test Bio::DB::SeqFeature adaptor. I used details into webpage: http://www.gmod.org/wiki/index.php/GBrowse_Install_HOWTO#GFF3_Loading and this file as my GFF3: http://genomics.cribi.unipd.it/~bilardi/data/gbrowse/myfile.gff
I runned commands: $ mysql -u root -e "create database SF_test_db" $ mysql -u root -e "grant all privileges on SF_test_db.* to [EMAIL PROTECTED]" $ mysql -u root -e "grant select on SF_test_db.* to 'apache-login'@localhost" $ bseqfeaturep_load.pl -u mylogin -p mypassword -d dbi:mysql:SF_test_db -s Bio::DB::SeqFeature -a DBI::mysql -c -f myfile.gff And I changed myfile.conf: http://genomics.cribi.unipd.it/~bilardi/data/gbrowse/myfile.conf I modified myfile.conf in the head. I changed line about db_adaptor: db_adaptor = Bio::DB::SeqFeature::Store and I add line about db_args: -adaptor DBI::mysql This is my gbrowse page: http://gbrowse.cribi.unipd.it/bin/gbrowse/sf_test/ and it has not image about tracks.. I think that there is an error in myfile.conf or I do not add one basic line about Bio::DB::SeqFeature adaptor. I do not understand where it is the error. Do you know because I don't obtain this? With thanks in advance. Best, Alessandra. =~=~=~=~=~=~=~=~=~=~=~=~= CRIBI, University of Padova, Italy http://genomics.cribi.unipd.it =~=~=~=~=~=~=~=~=~=~=~=~= ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
