Viswanadham Sridhara wrote:
Hi David,
you mean time dependent field is already implemented in the latest version?

that's correct. please check the source code in 3.3 (src/mdlib/sim_util.c)
I will also update the manual if necessary.

I am still using the older version of Gromacs, I have to update it if it is implemented in the latest version.!
Thanks,
-Viswanadham

On 3/1/06, *David van der Spoel* <[EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>> wrote:

    Shafrir, Yinon (NIH/NCI) [F] wrote:
     > Hi there!
     >
     >
     >
     > I was wondering if one can apply an electric field in only parts
    of the
     > system, say between two parallel planes  z0<z<z1 that are in the
    middle
     > of the box.
     >
     > Any ideas?
    Doesn't work, butis easy to hack: src/mdlib/sim_util.c
     >
     > How about a time dependent field?
    Is already implemented.

     >
     >
     >
     > Sincerely
     >
     > Yinon
     >
     >
     >
     >
     >
    ------------------------------------------------------------------------
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    --
    David.
    ________________________________________________________________________
    David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
    Dept. of Cell and Molecular Biology, Uppsala University.
    Husargatan 3, Box 596,          75124 Uppsala, Sweden
    phone:  46 18 471 4205          fax: 46 18 511 755
    [EMAIL PROTECTED]
    <mailto:[EMAIL PROTECTED]>    [EMAIL PROTECTED]
    <mailto:[EMAIL PROTECTED]>   http://folding.bmc.uu.se
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--
Viswanadham Sridhara,
Graduate Research Assistant,
Old Dominion University, "VIRGINIA".


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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
[EMAIL PROTECTED]       [EMAIL PROTECTED]   http://folding.bmc.uu.se
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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