I had a similar problem before. Check and see if "cpp" is in
/usr/bin/cpp path. Sometime it is in /lib/cpp depending on your
operating system. You can check the location of cpp by typing "which
cpp" on the command line.
Hope this help, Sukit
Kushal Seth wrote:
HI all !
I am gettting this error while doing my simulation... for the
bilayers
Back Off! I just backed up emout-nowater.mdp to
./#emout-nowater.mdp.1#
checking input for internal consistency...
...ling /usr/bin/cpp
: No such file or directory
cpp exit code: 32512
-I/usr/local/gromacs/share/gromacs/top mytop-nowater1.top >
gromppdriwHo'
' command is defined in the .mdp file
processing topology...
processing coordinates...
-------------------------------------------------------
Program grompp, VERSION 3.3
Source code file: grompp.c, line: 427
Fatal error:
number of coordinates in coordinate file
(binaryCR-Ochol-box-largeZ.pdb, 10280)
does not match topology (mytop-nowater1.top, 0)
I would appreciate if anyone can help me out with this.
Thanks
Kris
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