hi, On Tuesday 25 April 2006 07:44, Shankar Prasad Kanaujia wrote: > Dear Gromacs Users, > I am installing parallel version of gromacs on linux cluster, but I do not > want to use all the nodes for my simulation. Is there any way to select > some specific nodes for simulation ? > > Will I have to specify the nodes while installing or I would be able to > select the nodes after installation according to my requirement ? > > What are the necessary files to be edited for the same ?
You have to install a batch processing and resource management system, there are several around like openpbs (http://www-unix.mcs.anl.gov/openpbs/), maui and torque ... also there s a solution from sun/ sgi afaik the only free solution is openpbs and it will work for small installations without high requirements. if you want to run it parallel you have to install mpich and lam. Also a shared filesystem for all this nodes would be nice (easiest nfs also afs or any other shared filesystem like clusterfs). > > Thanks, > Shankar Prasad Kanaujia > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php Greetings, Florian -- ------------------------------------------------------------------------------- Florian Haberl Computer-Chemie-Centrum Universitaet Erlangen/ Nuernberg Naegelsbachstr 25 D-91052 Erlangen Mailto: florian.haberl AT chemie.uni-erlangen.de ------------------------------------------------------------------------------- _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php