Hi I now tried to install gromacs in a separate directory and not the source tree which is:
/work1/r0914/gromacs/ I got following error while Make ____________________________________________________________________________ cc -DHAVE_CONFIG_H -I. -I. -I../../../src -I/usr/X11R6/include -I../../../include -I/users/ums/r0914/fftw-3.1.1/include -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -MT ilasrt2.lo -MD -MP -MF .deps/ilasrt2.Tpo -c ilasrt2.c -o ilasrt2.o /bin/sh ../../../libtool --tag=CC --mode=link cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -L/users/ums/r0914/fftw-3.1.1/lib -o liblapack.la dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo -L/usr/X11R6/lib -lnsl -lfftw3f -lm -lSM -lICE -lX11 libtool: link: `slarft.lo' is not a valid libtool object make[4]: *** [liblapack.la] Error 1 make[4]: Leaving directory `/work1/r0914/gromacs-3.3.1/src/gmxlib/gmx_lapack' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/work1/r0914/gromacs-3.3.1/src/gmxlib' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/work1/r0914/gromacs-3.3.1/src' make[1]: *** [all] Error 2 make[1]: Leaving directory `/work1/r0914/gromacs-3.3.1/src' make: *** [all-recursive] Error 1 ____________________________________________________________________________ Kindly Help Akshay Patny |-----Original Message----- |From: Rene Meier [mailto:[EMAIL PROTECTED] |Sent: Wednesday, April 26, 2006 2:40 AM |To: [EMAIL PROTECTED]; Discussion list for GROMACS users |Subject: Re: [gmx-users] Gromacs-3.3.1 installation | |On Wed, 26 Apr 2006 02:27:45 -0500 |Akshay Patny <[EMAIL PROTECTED]> wrote: | |> Hi |> |> |> |> I am trying to install Gromacs-3.3.1 The machine is SGI Altix and the |output |> of the uname -a for machine is: |> |> |> |> Linux redwood 2.6.5-7.244-sn2 #1 SMP Mon Dec 12 18:32:25 UTC 2005 ia64 |ia64 |> ia64 GNU/Linux |> |> |> |> I do not have root privileges and I am trying to install it in the local |> directory I have permissions for which is: |> |> |> |> I unpacked gromacs-3.3.1.tar in the /work1/r0914 |> |> |> |> It made a directory /work1/r0914/gromacs-3.3.1/ |> |> |> |> I first installed fftw-3.1.1 (both single precision and double precision |> using) in a separate directory which is: |> |> |> |> ums/ro914/fftw-3.1.1 |> |> |> |> Then, I cd to /work1/r0914/gromacs-3.3.1/ |> |> |> |> # setenv CPPFLAGS -I/ ums/ro914/fftw-3.1.1/include |> |> # setenv LDFLAGS -L/ ums/ro914/fftw-3.1.1/lib |> |> |> |> # ./configure -prefix=/work1/r0914/gromacs-3.3.1/ | |-prefix tells install to which directory it should copy the program and all |of its files. I think it is not a good idea to install the program directly |into the source tree. use something else as destination directory e.g |/work1/r0914/prog. | |> |> |> |> # make |> |> |> |> # make install |> |> |> |> I got the error in the make install which is: |> |> |___________________________________________________________________________ |_ |> ______________ |> |> |> |> /usr/bin/install: `./g_sham.1' and |> `/work1/r0914/gromacs-3.3.1/man/man1/g_sham.1' are the same file |> |> /usr/bin/install -c -m 644 './make_edi.1' |> '/work1/r0914/gromacs-3.3.1/man/man1/make_edi.1' |> |> /usr/bin/install: `./make_edi.1' and |> `/work1/r0914/gromacs-3.3.1/man/man1/make_edi.1' are the same file |> |> make[3]: *** [install-man1] Error 1 |> |> make[3]: Leaving directory `/work1/r0914/gromacs-3.3.1/man/man1' |> |> make[2]: *** [install-am] Error 2 |> |> make[2]: Leaving directory `/work1/r0914/gromacs-3.3.1/man/man1' |> |> make[1]: *** [install-recursive] Error 1 |> |> make[1]: Leaving directory `/work1/r0914/gromacs-3.3.1/man' |> |> make: *** [install-recursive] Error 1 |> |> |___________________________________________________________________________ |_ |> ______________ |> |> |> |> Let me know if you need other details |> |> |> |> Regards |> |> Akshay |> |> |> |> Akshay Patny |> |> |> |> Graduate Research Assistant |> Faser Hall 417, Department of Medicinal Chemistry |> |> Research Institute of Pharmaceutical Sciences |> University of Mississippi |> University, MS 38677 |> E-mail: [EMAIL PROTECTED] |> Tel: 662-915-1286 (office); Web: www.olemiss.edu |> |> |> |> | | |-- |René Meier |Institut für Pharmazeutische Chemie |Martin-Luther-Universität Halle email: | [EMAIL PROTECTED] |Wolfgang-Langenbeck-Str. 4 phone: (49)345 55-25043 |06120 Halle (Saale) fax: (49)345 55-27355 |Petition für ein Softwarepatent-Freies Europa: |http://www.ffii.org/index.de.html | _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. 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