Dear Gromacs Users,

I'm looking for an easy way to relatively orient two large molecules
(many rings with long CnH2n+1 tails): keep one fixed and translate
and/or rotate the second one with respect to a given direction. The idea
behind would be to fill up then the box with a solvent and run a
position restrained MD.

Does anyone have an idea of a freeware to do that?

Regards,
Adama

Adama Tandia
Corning INC
Corning, NY USA
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