karamyog singh wrote:
Respected gentlemen, I have written another code for simulating atomic oxygen. the code is running fine. however when i view my run using ngmx, the entire box doesn't get filled up.It just shows one plane of atoms. I have a box of 27 atoms but ngmx shows only 9. Can any1 tell me why and the solution to this problem.

 27MY   OX   27  0.000000   0.250000  0.500000 ; 0.000 0.000 0.000
0.5 0.5 0.5

Your box is of size 0.5x0.5x0.5, so atom 27 overlays exactly with some other atom at 0,0.25,0... evidently you are doing this with all of your atoms!

Mark
_______________________________________________
gmx-users mailing list    gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php

Reply via email to