Thanks Mark for your reply, I run MD for 1000000 (2ns) at dt = 0.002. In both occasion, shutdown happened during mid night at around 7800 steps. I could not fix the problem by looking at log file as it does not contain any information regarding this.
Is it possible that the gromacs could influence the shutting down the system because of it struck at some level during the computation? One more additional information I would like to add here, I usually prepare all necessary files prior to full MD simulation in my system (windowsXP) and transform it to some other machine (windows2000) only for final production phase of MD run. Can it be the cause? With thanks! B.Nataraj On Mon, 12 Jun 2006 16:24:14 +1000, "Mark Abraham" <[EMAIL PROTECTED]> said: > raja wrote: > > Dear Gmxions, > > While I run MD (Gromacs 3.3.1) in cygwin under windows2000 for > > 2ns, it shuts off automaticaly after 2days . It happened in two > > different machine installed windows2000 professional. Any previous > > experience by any of this sort ? > > Not that I've heard of... are we talking 48 hours +/- 5 minutes or are > we talking anything between 30 and 60 hours? How many steps run? How big > are the output files? > > > But it works perfect for windowsXP. > > So maybe the problem is with Windows 2000, not gromacs. > > Mark > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- raja [EMAIL PROTECTED] -- http://www.fastmail.fm - mmm... Fastmail... _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
