Hi:
I have just fixed the following make_edi.c errors, by
changing the code to:
{ "-linfix", FALSE, etSTR, {&evSelections[evLINFIX]},
{ "-linacc", FALSE, etSTR, {&evSelections[evLINACC]},
{ "-radfix", FALSE, etREAL, {&evSelections[evRADFIX]},
And I succeeded to compile and install gromacs 3.3.1.
But I still can't run the mdrun program on the sgi irix machine.The mdrun doesn't work.
Please help! Thanks a lot.
James
____________________________________________________________________________ cc-1028 cc: ERROR File = make_edi.c, Line = 579 The _expression_ used must have a constant value.
{ evStepOptions[evLINFIX], FALSE, etSTR, {&evParams[evLINFIX]}, ^ cc-1028 cc: ERROR File = make_edi.c, Line = 581 The _expression_ used must have a constant value. { evStepOptions[evLINACC], FALSE, etSTR, {&evParams[evLINACC]}, ^ cc-1028 cc: ERROR File = make_edi.c, Line = 583 The _expression_ used must have a constant value. { evStepOptions[evRADFIX], FALSE, etREAL, {&radfix}, ^ cc-1552 cc: WARNING File = make_edi.c, Line = 622 The variable "bTop" is set but never used. bool bTop, bM, bFit1; ^ 3 errors detected in the compilation of "make_edi.c". *** Error code 2 (bu21) *** Error code 1 (bu21) *** Error code 1 (bu21) ____________________________________________________________________________ I really appreciate your help. Kind Regards Akshay Akshay Patny Graduate Research Assistant Faser Hall 417, Department of Medicinal Chemistry Research Institute of Pharmaceutical Sciences University of Mississippi University, MS 38677 E-mail: akshay17 at olemiss.edu Tel: 662-915-1286 (office); Web: www.olemiss.edu |-----Original Message----- |From: David van der Spoel [mailto:spoel at xray.bmc.uu.se] |Sent: Tuesday, April 18, 2006 12:22 AM |To: akshay17 at olemiss.edu; Discussion list for GROMACS users |Subject: Re: [gmx-users] GROMACS 3.3.1 installation on SGI (Irix): 2 | |Akshay Patny wrote: |> Hi |> Hi ALl |> |> I read through some of the e-mails of B. Nataraj and Erik Lindahl for |> similar problem on compiling of GROMACS 3.3.1 on SGI IRIX. |> |> As my error also pointed to a problem in "gmx_fft_fftw3.c", I replaced |the |> 'void' with 'char' in the line 150 of the file, as suggested. |> |> I got the errors exactly the same as B. Nataraj got after doing this |> modification, which is listed at |> http://www.gromacs.org/pipermail/gmx-users/2006-April/020969.html |> |> The same error is given below. I could not understand how to fix this |error |> and run GROMACS successfully. |> |> Dr. Erik Lindahl wrote that: "As far as I can see that file is perfectly |> valid ANSI C - there is no executable statement in the declaration |section." |> |> However, I still do not know how to fix this? |> | |there is a double semicolon on one of the lines before it. please remove |it and retry. | |> Please help. |> |> Regards |> Akshay |> |> Error is given below: |> |___________________________________________________________________________ |_ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1031 |> A declaration cannot appear after an executable statement in a block. |> |> static real core_frac=0.5 ; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1032 |> A declaration cannot appear after an executable statement in a block. |> |> t_pargs pa[] = { |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1073 |> A declaration cannot appear after an executable statement in a block. |> |> FILE *log; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1074 |> A declaration cannot appear after an executable statement in a block. |> |> int natoms,nlist,naa,idum,nbin; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1075 |> A declaration cannot appear after an executable statement in a block. |> |> t_atoms atoms; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1076 |> A declaration cannot appear after an executable statement in a block. |> |> rvec *x; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1077 |> A declaration cannot appear after an executable statement in a block. |> |> matrix box; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1078 |> A declaration cannot appear after an executable statement in a block. |> |> char title[256],grpname[256]; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1079 |> A declaration cannot appear after an executable statement in a block. |> |> t_dlist *dlist; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1080 |> A declaration cannot appear after an executable statement in a block. |> |> char **aa; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1081 |> A declaration cannot appear after an executable statement in a block. |> |> bool bChi,bCorr,bSSHisto; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1082 |> A declaration cannot appear after an executable statement in a block. |> |> bool bDo_rt, bDo_oh, bDo_ot, bDo_jc ; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1083 |> A declaration cannot appear after an executable statement in a block. |> |> real dt=0, traj_t_ns; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1085 |> A declaration cannot appear after an executable statement in a block. |> |> atom_id isize,*index; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1086 |> A declaration cannot appear after an executable statement in a block. |> |> int ndih,nactdih,nf; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1087 |> A declaration cannot appear after an executable statement in a block. |> |> real **dih,*trans_frac,*aver_angle,*time; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1088 |> A declaration cannot appear after an executable statement in a block. |> |> int i,j,**chi_lookup,*xity; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1090 |> A declaration cannot appear after an executable statement in a block. |> |> t_filenm fnm[] = { |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1106 |> A declaration cannot appear after an executable statement in a block. |> |> int npargs; |> ^ |> |> cc-1241 cc: ERROR File = gmx_chi.c, Line = 1107 |> A declaration cannot appear after an executable statement in a block. |> |> t_pargs *ppa; |> ^ |> |> 20 errors detected in the compilation of "gmx_chi.c". |> *** Error code 1 (bu21) |> *** Error code 1 (bu21) |> *** Error code 1 |> |(bu21)_____________________________________________________________________ |_ |> ______ |> |> |> Akshay Patny |> |> Graduate Research Assistant |> Faser Hall 417, Department of Medicinal Chemistry |> Research Institute of Pharmaceutical Sciences |> University of Mississippi |> University, MS 38677 |> E-mail: akshay17 at olemiss.edu |> Tel: 662-915-1286 (office); Web: www.olemiss.edu |> |> |> _______________________________________________ |> gmx-users mailing list gmx-users at gromacs.org |> http://www.gromacs.org/mailman/listinfo/gmx-users |> Please don't post (un)subscribe requests to the list. Use the |> www interface or send it to gmx-users-request at gromacs.org. |> Can't post? Read http://www.gromacs.org/mailing_lists/users.php | | |-- |David. |________________________________________________________________________ |David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group, |Dept. of Cell and Molecular Biology, Uppsala University. |Husargatan 3, Box 596, 75124 Uppsala, Sweden |phone: 46 18 471 4205 fax: 46 18 511 755 |spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se |++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
--
James
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