Finally I've got the map using xpm2ps
I'm new to gromacs and Linux, so it will take some time to learn the script language.
On 10/1/06,
Erik Marklund <[EMAIL PROTECTED]> wrote:
----- Original Message -----
From: "David van der Spoel" <[EMAIL PROTECTED]>
To: "Discussion list for GROMACS users" < gmx-users@gromacs.org>
Sent: Saturday, September 30, 2006 2:37 AM
Subject: Re: [gmx-users] HBond frequency
> liu xin wrote:
>> Thanks, but when ever I used ACDsee to visualize the generated hbmap.xpm,
>> I've got nothing, and ACDsee keeps on telling me that "Bad or
>> unrecognized image header".
>>
> Try the gimp or use xpm2ps first.
>
> --
> David.
Or analyze the data by other means. The image data is uncompressed and
stored row-wise in the file, making it relatively easy to extract, in your
case, hbond frequencies, using most any scripting language.
/Erik
> ________________________________________________________________________
> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596, 75124 Uppsala, Sweden
> phone: 46 18 471 4205 fax: 46 18 511 755
> [EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> _______________________________________________
> gmx-users mailing list gmx-users@gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the www
> interface or send it to [EMAIL PROTECTED].
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
_______________________________________________
gmx-users mailing list gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED] .
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
_______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
