andrea carotti wrote:
The problem is that i don't have an energy file cause this time I'm
using gromacs only for analyze my trajs...so I don't know how to make
the plot you suggested. Now perhaps I've found a workaroud using trjconv
with the option -box 1 1 1 set, but I' don't know if this could be
correct.
make it a realistic size, maybe 3 3 3
(I've checked the ouput traj in VMD and seems fine, and with it g_hbond
is working)
Best
Andrea
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David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
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