Will be rather complex one to make I think. Part C is easy, use the
make_ndx script to generate an index file with the following groups:
all
C
CH3
H
Then run g_rdf with each of the pairings you want.
Personally don't know about the same chain / different chains though.
To do it properly I think you will have to hack the code.
Catch ya,
Dr. Dallas Warren
Lecturer
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
[EMAIL PROTECTED]
+61 3 9903 9524
---------------------------------
When the only tool you own is a hammer, every problem begins to resemble
a nail.
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