Dear Gromacs users, I have simulated 12 peptide fragments in a cubic box and I want to use do_dssp for secondary structure analysis but I am not sure whether Periodic boundary conditions will be taken in account during assignment (particularly for assigning betasheets). Regards, Gurpreet Singh ------------------------------------------------- University of Dortmund Department of Chemistry Physical Chemistry I - Biophysical Chemistry Otto-Hahn Str. 6 D-44227 Dortmund Germany Office: C1-06 room 176 Phone: +49 231 755 3916 Fax: +49 231 755 3901 -------------------------------------------------
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