Try the -hbm option.
_______________________________________________
Erik Marklund, PhD student
Laborarory of Molecular Biophysics,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: +46 18 471 4537 fax: +46 18 511 755
[EMAIL PROTECTED] http://xray.bmc.uu.se/molbiophys
On Tue, 9 Jan 2007, OZGE ENGIN wrote:
Hi,
By using the hnum option of g_hbond, I was able to get the hbond.ndx file.
However, I want to know exactly which atom groups take participate to the
formation of that hbonds over each frame both for prot-prot and prot-solvent.
How can I do that? (In hbond.ndx file, as you know, the hbonds are written in a
time-independet manner. )
Thanks in advance!
ozge
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